| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_1275 |
|---|
| Symbol | |
|---|
| ID | 4439499 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus gasseri ATCC 33323 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008530 |
|---|
| Strand | - |
|---|
| Start bp | 1269965 |
|---|
| End bp | 1271035 |
|---|
| Gene Length | 1071 bp |
|---|
| Protein Length | 356 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 639673108 |
|---|
| Product | Type II secretory pathway/competence component, ATPase |
|---|
| Protein accession | YP_815076 |
|---|
| Protein GI | 116629904 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 70 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCAGTCT TTTTTTTCTT AATTTTTAAA ATGATAAAAA AATATGGCCT ATTTTCGCGT
ACTAATAAGT GTATGGCAAA GGAGGGATTA ATTATGAACG AAGTATCAGA AGCTATTTTA
GAAAAAGCAA TTGAAAGCCA TGCTAGTGAT ATCTTTATTT TTCCCGCTAT TAGAGGATAT
GAAATAAAGA TTCGAACTGC CCTAGGTTTG AGTAAAATAA AAGAATTAAG CCAGAAAGTA
GGAAAGGAAT TACTTAATTA TTTCAAGTTT CAGGCGCAAA TGGATATATC TGAGCGTCGT
AGACCACAAG TGGGGGCGTA TCAGACTGAA TTTCGGGGTG AAAAGGTCTT TTTACGCTTC
TCAAGTGTAG GGGAATTTGA AGGAGATGAG TCTTTAGTAG TTCGATTAAT TTATGAAGGG
AAAAGTAATA ATTATTTTCT CCCCGAACAA TTTGATTTGC TAAAAAGACT CACCAATCAA
CGTGGGCTGA TAGTGACTAG CGGTCCGACA GGATCAGGAA AGACCTCAAC CATGTATGAG
TTAGCGCAAT TAGTTGGAGA AAAAAAGGTT GTAATGACTA TTGAAGATCC AGTCGAGGTT
TGGAATCCAA GTTTTTTACA AACACAAGTG AATCTTGTTG CGGGAATTAC TTACCCAGAT
TTACTAAAGG CTGCTTTACG TCATAGACCG GATATTTTAA TTATTGGAGA AATTCGAGAC
CAAGAAACTG CCAAAATCAG TATTAACGCA GCTCTAAGTG GACATTTGGT TTTAGCAACT
ATTCATGCAA AAACAGCTTT ACAAACAATT TCACGGCTTG AAGGATTAGG AATCACTAAA
GACGAATTGT GCAATTGCTT GACGGCTGCT TCTTATCAAA GATTGTTACC GATAAAAGAT
CGAAATAAAG TTGCCTGTTT AATGGATATT GGATATGGAA AAATACTTGA TCAAGCTATT
ATGTCTAATG ATAAGCGTCA TGATTTGCGC AACTGGCAAA GTGCTTTAGA GCAGTTGGTT
GAAAGAGGAA AGATTAGTGA AGATACGAAG CATCTTTATG AAGAAGGATA A
|
|---|
| Protein sequence | MSVFFFLIFK MIKKYGLFSR TNKCMAKEGL IMNEVSEAIL EKAIESHASD IFIFPAIRGY
EIKIRTALGL SKIKELSQKV GKELLNYFKF QAQMDISERR RPQVGAYQTE FRGEKVFLRF
SSVGEFEGDE SLVVRLIYEG KSNNYFLPEQ FDLLKRLTNQ RGLIVTSGPT GSGKTSTMYE
LAQLVGEKKV VMTIEDPVEV WNPSFLQTQV NLVAGITYPD LLKAALRHRP DILIIGEIRD
QETAKISINA ALSGHLVLAT IHAKTALQTI SRLEGLGITK DELCNCLTAA SYQRLLPIKD
RNKVACLMDI GYGKILDQAI MSNDKRHDLR NWQSALEQLV ERGKISEDTK HLYEEG
|
|---|
| |