| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_1222 |
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| Symbol | |
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| ID | 4439580 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Lactobacillus gasseri ATCC 33323 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008530 |
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| Strand | - |
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| Start bp | 1224797 |
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| End bp | 1225534 |
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| Gene Length | 738 bp |
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| Protein Length | 245 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 639673059 |
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| Product | 16S rRNA uridine-516 pseudouridylate synthase related pseudouridylate synthase |
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| Protein accession | YP_815029 |
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| Protein GI | 116629857 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0000251934 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 99 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | TTGCTAGTGC TTTTTTTGTT TGAGAAAGAT ATAGAAATGA GAATTGATAA GTATTTAGCT
AACATGAATG TTGGCTCGCG TAAAGAAGTT CACAGTCTTA TTAAAAAGAA AGTTGTGACA
GTTAATGGAG AACTGGTAAC TATCCCAAAA CAACAAGTTA AAGAAACTGA TTTGGTAGCA
GTTGATGGAA ATAAAATTGC ATATCAACAG TATCATTATT TTTTATTAAA TAAGCCTAAG
GGTGTAATTT CAGCAACTGA AGATAGAAGT CAGCAGACAG TTATTTCATT GCTTAAAACT
AAAGATCGTT ATCAAGGTAT TGCCCCAGTA GGTAGATTAG ATAAAGATAC TACAGGCTTG
TTGCTTTTAA CAAATGATGG AGCTTTAGCA CACGAACTGC TTGCTCCAAA TAAACATGTT
GCAAAAGTAT ATCGAGCAAA AATTGCTGGT GTTCCAGATC CAGAAACTGC TAAGAAATTT
GCTCAAGGGC TGATTTTAGG TGACGGAACT AAGTTGAAGC CGGCGAAATT AAAGATTTTA
AAACAGGATC AAGATAATAA TCTGTCGCAA ATCGAGATTC AAATTCAAGA AGGAAAATAT
CATCAAATTA AGCGAATGTT TGGAGCAGTT GGCATGAAAG TCTTGGAACT AGATCGGGTT
TCAATGGGTA AATTGCATTT ACCTGCTGAT TTAAAGCGTG GAGAATATAA AGAGATTGAT
CTAGCTGAAA TTAAGTAA
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| Protein sequence | MLVLFLFEKD IEMRIDKYLA NMNVGSRKEV HSLIKKKVVT VNGELVTIPK QQVKETDLVA
VDGNKIAYQQ YHYFLLNKPK GVISATEDRS QQTVISLLKT KDRYQGIAPV GRLDKDTTGL
LLLTNDGALA HELLAPNKHV AKVYRAKIAG VPDPETAKKF AQGLILGDGT KLKPAKLKIL
KQDQDNNLSQ IEIQIQEGKY HQIKRMFGAV GMKVLELDRV SMGKLHLPAD LKRGEYKEID
LAEIK
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