| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_1189 |
|---|
| Symbol | mnmA |
|---|
| ID | 4439582 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus gasseri ATCC 33323 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008530 |
|---|
| Strand | - |
|---|
| Start bp | 1190831 |
|---|
| End bp | 1191982 |
|---|
| Gene Length | 1152 bp |
|---|
| Protein Length | 383 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 639673026 |
|---|
| Product | tRNA-specific 2-thiouridylase MnmA |
|---|
| Protein accession | YP_814996 |
|---|
| Protein GI | 116629824 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain |
|---|
| TIGRFAM ID | [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.189801 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 71 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCTAAAAG GAGAAAAAGA TAAAATGGTA GATAACAGCG AAATTAGAGT CGTTGTTGGG
ATGAGTGGAG GAGTTGATTC TTCAGTTTCT GCTCTTTTAC TCAAACAACA AGGCTTTGAT
GTTGTCGGCG TCTTCATGAA GAATTGGGAT GATACTGATG ATTCCGGAGT TTGTACGGCA
ACTGAAGATT ACGAAGATGT AAAAAAAGTT GCAGATGAAA TCGGCATTCC TTATTATTCT
ATTAATTTTG AAAAAGATTA CTGGGAGCGA GTATTTGAAT ATTTCTTAAA TGAATATAAG
AAAGGTAGAA CTCCTAATCC CGATGTAATG TGCAATAAAG AAATAAAATT TAAATCCTTC
TTAGATTTTG CAATGGATCT AGATGCAGAT TATATTGCAA TGGGTCACTA TGCAGCTACT
AAGGTTGATG AGAATGGTAT TGTACATATG ATGCGACCAA AAGATGGCAA TAAGGACCAA
ACTTACTTCT TAAGTCAACT TTCACAAGAT CAATTGAAAA AGGTAATCTT CCCGCTTGCT
AACTTAACTA AGCCACAAGT GCGTGAAATT GCAATTGACG CAGGCCTTGC CACCGCTAAG
AAGAAGGATT CAACTGGAAT CTGTTTTATT GGTGAACGTA ACTTTAAAAA GTTCTTGAGT
GAATTTTTAC CAGCTCAATC AGGAAAGATG GTTACTCCTG ATGGAAAAGT TGTGGGCGAG
CATGCTGGAT TAATGTATTA TACTATCGGT CAAAGATCCG GTCTTGGCTT AGGTTCAACG
AAGGAATCAA CTGATCCTTG GTTTGTAGTA GGTAAGGATT TAAAGAAGAA TGAATTGATC
GTTGAGCAAG GATACGATAG TAAGCTTTTA TATGCTACTA GCTTAGATGC AAGTGGCGTA
TCCTTCTTTA CTGGTCAGCC GGAGCATGAT ATTGATTTGA AGTGCACTGC TAAGTTTAGA
TACCGCCAGC CAGATGTTGG TGTTACTATG CATTATCATG CAAAAGATAA TACAGTTCAT
GTTGAATTTG ATGAACCTGC GCGTGCCGTT ACGCCAGGAC AGGCAATTGT TTTCTATAAT
GGTGAAGAAT GTCTTGGTGG GGCAACTATT GACCGTGCTT ACCAAAATGA AAAGCAATTG
CAATTAGTAT AG
|
|---|
| Protein sequence | MLKGEKDKMV DNSEIRVVVG MSGGVDSSVS ALLLKQQGFD VVGVFMKNWD DTDDSGVCTA
TEDYEDVKKV ADEIGIPYYS INFEKDYWER VFEYFLNEYK KGRTPNPDVM CNKEIKFKSF
LDFAMDLDAD YIAMGHYAAT KVDENGIVHM MRPKDGNKDQ TYFLSQLSQD QLKKVIFPLA
NLTKPQVREI AIDAGLATAK KKDSTGICFI GERNFKKFLS EFLPAQSGKM VTPDGKVVGE
HAGLMYYTIG QRSGLGLGST KESTDPWFVV GKDLKKNELI VEQGYDSKLL YATSLDASGV
SFFTGQPEHD IDLKCTAKFR YRQPDVGVTM HYHAKDNTVH VEFDEPARAV TPGQAIVFYN
GEECLGGATI DRAYQNEKQL QLV
|
|---|
| |