Gene LGAS_1175 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLGAS_1175 
Symbol 
ID4439603 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLactobacillus gasseri ATCC 33323 
KingdomBacteria 
Replicon accessionNC_008530 
Strand
Start bp1176866 
End bp1177606 
Gene Length741 bp 
Protein Length246 aa 
Translation table11 
GC content34% 
IMG OID639673012 
ProductDNA uptake protein related DNA-binding protein 
Protein accessionYP_814982 
Protein GI116629810 
COG category[L] Replication, recombination and repair 
COG ID[COG1555] DNA uptake protein and related DNA-binding proteins 
TIGRFAM ID[TIGR00426] competence protein ComEA helix-hairpin-helix repeat region
[TIGR01259] comEA protein 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0000209814 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.00000760392 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
TTGAAAGCAG CAAAAAAATT GCTGCTTTTT TTCGTAATAA ATAATGAGGT GATAAAAATG 
GATTTAGAAA AAATCAAAGA ATTCATAATT GAAAAGAAAA TTGTTGTAAT TGGAGTTATT
GTTTTGATCC TAGGCGGAGG ATATTTGATT CAGAAAAATA ATCAGCCGGC AGTCAATAAT
ACTCAAGTGT TGAGTGAAAA TAATAAGACG CAGCCAGCAG AATTTTCTAA AAGTGAGAAT
AAAACTACTC ATTCTACGTC AAACTTAAAT AGCTCCTCAA AACAAAACAC AGTAACTGTA
GATATTGCTG GAGCTGTTAA ACATAGTGGC GTTTATATAT TAAAAAATGG TGCTAGATTA
AACGATCTGT TAAAGATTTG TGGTGGCTTA ACTGATAAAG CAGAGACGCG TGCGATTAAT
CGAGCAGCCT TATTAAAAGA TCAAGATCAA ATTTATGTCC CGCACATTGG TGAAAAAGTA
GAAAATCCTC CTGGAAATGG AACTTCTAAT AATAATTCTG CTGCTTCTGA TTCTTCTAGT
TCAAATTCAG AGCAAGTTCA TTTAAATACA GCAACAGTGC AGGACTTACA AAAGCTAAAT
GGCGTTGGGC AAAAGAAGGC AGAGCAGATT ATTGCTTATC GTGATCAAAA TGGGGGCTTT
AAGCAAATTG AAGATTTGAC TAAAGTAACA GGAATTGGTG AAAAGACTTT TGAAAAGCTC
AAAGATCAGT TGGCACTCTA G
 
Protein sequence
MKAAKKLLLF FVINNEVIKM DLEKIKEFII EKKIVVIGVI VLILGGGYLI QKNNQPAVNN 
TQVLSENNKT QPAEFSKSEN KTTHSTSNLN SSSKQNTVTV DIAGAVKHSG VYILKNGARL
NDLLKICGGL TDKAETRAIN RAALLKDQDQ IYVPHIGEKV ENPPGNGTSN NNSAASDSSS
SNSEQVHLNT ATVQDLQKLN GVGQKKAEQI IAYRDQNGGF KQIEDLTKVT GIGEKTFEKL
KDQLAL