| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_0943 |
|---|
| Symbol | |
|---|
| ID | 4439862 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus gasseri ATCC 33323 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008530 |
|---|
| Strand | + |
|---|
| Start bp | 942839 |
|---|
| End bp | 945778 |
|---|
| Gene Length | 2940 bp |
|---|
| Protein Length | 979 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 639672798 |
|---|
| Product | adhesion exoprotein |
|---|
| Protein accession | YP_814769 |
|---|
| Protein GI | 116629597 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain
[TIGR01168] Gram-positive signal peptide, YSIRK family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 69 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTATCAA GAAATAATAA TCATTTTAAT GAACTTAAAG AAATAAGTCC TCGTTATTCA
ATTCGTAAGT TTACTGTCGG AGCAGCTTCT GTTCTTATAG GGATGTCAAT TTTCGGGCTA
AATTCTCAAA CAGCTCAAGC AGATAGTGTT AATGAAAATG GTTCAAATAA ACAAAATCCT
GCTGTTGAAC AGGAATCAAG CAAGGCACTT ACAACTAGTC CATCAAGTAA TATTAAAAAC
GTGGTTGTAA CTACTAAGAA TGTAGATGCA CAAAATCAAG TATCTGCTGA AAAGTCAAAG
GTTAATACAA GCAGTGAACA AAAAGCAACT AATACCAATA AAGAAAGCAA TCAACGTGCC
GAGCTACAGA TAGAAAATAC TAAAAAAGTT ATTGCAGCAA ATAAAGATCA AACTAAACAA
GTTTCAACTG CTGATCAAGA TCAAGCTAAA CCAGTTGCCA AAGAAAATTA TAGTGTTATC
CAGCATGATG TGGTTGCAAA TAACGGAAAT ACCCCACATG ATAGTGGCTA TGTTCAACTA
AATTTAGGAT TAAAAATAGA AAATACTAAG AACATTAATC CTGGTGATTA TATTGATATT
GATTTAGGCT TGCCACTACA ATCTGGCCAG CAAAAAACGT ATAGTGATGG TTTAGCAGAG
AAAGATACAC CAGTAACCGT TAAAGATAAT GCAGGAAAGA CGGATACAAT AGGAAATATT
GCCACAGTAG GAAATATTCC GAATGAATTT TACCGATTAA GTTTTAACGA TCATATTCAA
AAATATGGTG CCATACTTCT TAATCTTGAT TTAAAGCAAT ATTCTTTAAT TCAGCGTGCT
ATTAGTACTG TCGGCTATTC TCATGAAAAG AATGGCCCAA CCAGTTATAG TGCTCAAAAT
GATCTAGTTA TTGGGGATGG CGCTTATAAA TTTACTTCTG GGTTAAGCGT TCCTGTTAAA
TATATTCCAC AAGAAAGTAG TGGAGCGATT ACTCCGCGGA TTGGAGAAAA CACATGGATT
CAAGGAAGAA GTACTGGCAT AAATTCTAGA GTATGGACTA TTTATCCTGA CGGATCATTT
ACTGTAAACG ATAAATCTCC GCTTGGGTTA GATGGAATCG TATATTTTGC TAAGAATTTT
GGTAATACTG CTACAGTAAC GGTTTATAGT CCAAGTAATA ATCCTTACTT TGATTATAAT
TATGCAAGCG ACAACGAGAT TAAAGAACAA ATTGAAAGTG CATTTGCTCA ACTAAAAGGG
ACTAACAATT TAGATCAAAT TGCTCAAGAT AATTCAAATG TCGGTTTTAG TTTAAATAAA
ATACCAGAAA ATAATATTTC AATTGTTGTT ACTCATAGTG ACAATCCTGA AAAAGCATAT
AGCACAGTCT TGAAAGCCGA TGGGTCGAAA TACAGTTCAG ATCAATTAAT GACTTCACGT
ACATATCACA TTACTGTTAA TGGAGCTAAT TTAGGTCAAA TATATTCTTT ACCAATTTCT
TTTATTTCTG AAATTACTAA AGCAGGTGTT GATGTTTCAA AGCCTGACGA TATTACTAAA
CCAGAAGAAG ATAAGGCTCA GATATATCAA GATCAAGATA AGTATGAAGT ACTTAATAAC
AATTTGAATA ATGCTTATCC AATTTTATAT AAGGGAATTA GAATCAATAA TCCCGAATTA
ATGAATTATA TGAAGAACAA TCTTGCTACT TGGATTGATG TGAAAGATGA TAATAATCCG
AATAATGAAT TAGTAGGTCC AGCAGCTTAT ACTCTTAATG TATCTGTTGT AAATCAGCCA
ACTAACTTAA AGCCACAAAA TATTGCAAAT GGTGATTCTT CAGGGCAACA ATTAGATCAA
ACTATTCTTG TTATTTTCCA GGACTTAGAT GAAAATAACA AAAATATCTT AAGTAAAGAT
TTAACTGGAT TAAGTGGAGC TGATGCTAGA TATTCAACTT TAAGTGATAT TAAGGCTTTA
GAAAATCAAC ATTATGAATT AGTTAGCGAT GATACTAAGG GTCAAAATCT TAAGTTTGGT
AATCAAAAAC AAGTATTTTA TGTCAAATTT AGACATGTTC TAAAGAAAGA AAAACAAGAA
AGTAAGAGTG TTTCTAGAAA TATTACTTAT GTTGACGATA AAGGAAATCC TGTTAAGGGA
TCACCTGATG GCAAAGCTAG CTATGTACAA AGTGCAAGTT TTGTTCGTTT TCCAGTGAAA
GATTTAGTGA CTGGTGTGGT CGGCTATAGT ATTAATAATG ATGGTGCAAT TGATACTCAG
GATGGTACTC ATGCATGGAA AGCAACTAGC AGTAATTATT TCGAAAAAGT AATTTCAAAA
GATCCTGCAT CATTAGGCTT TGAGCATGTT AACTATGCTG TTATTCCAGA AGAAACAGTA
GATGCAAATA CTAAAGATCA AGAGATCCAA GTTATTTATA GTGGTACTAC TAAGAAGCCA
GAACCAACTA AACCCGACAA GCCAAACAAG CCGGAGAAAC CGGAAACCCC GAATAAACCT
GACAAACCGA GTGAACCAAG TAAGCCAGAA ATGCCAAGCA AACCTGATAA ATCAAGTGAA
AGCAAGTCAA CTGAACCTGA GAAATTGATT CATCAAGCAA CATCAGACAC TTCAAAAAAT
CACAGTGAAT CAACTGAAAA AGAAGATTTA TCAAGATCAA AAGTTGCTTT AGATAAGACA
AGTTTTTCAC CTTTGGCTAG AAGAAATACT TCGTTAGTCA ATGAGAAGAT TAACACTTCT
GAATCATCAA AAGATTCAAC CAATCTGACT AAAAATAGAA CAGCAAATTC AAATAAAGAA
TTGCCACAAA CAAGTAGTAA CGCTCAACAA TCAATTGATG ATGAAGTGAT TGGTTCTGTT
GCTTTATCAA TAGGATTAAT TGGTTTAGCT GGTGTTAAAA AGAGAAAAAA GGCAAGATAA
|
|---|
| Protein sequence | MLSRNNNHFN ELKEISPRYS IRKFTVGAAS VLIGMSIFGL NSQTAQADSV NENGSNKQNP
AVEQESSKAL TTSPSSNIKN VVVTTKNVDA QNQVSAEKSK VNTSSEQKAT NTNKESNQRA
ELQIENTKKV IAANKDQTKQ VSTADQDQAK PVAKENYSVI QHDVVANNGN TPHDSGYVQL
NLGLKIENTK NINPGDYIDI DLGLPLQSGQ QKTYSDGLAE KDTPVTVKDN AGKTDTIGNI
ATVGNIPNEF YRLSFNDHIQ KYGAILLNLD LKQYSLIQRA ISTVGYSHEK NGPTSYSAQN
DLVIGDGAYK FTSGLSVPVK YIPQESSGAI TPRIGENTWI QGRSTGINSR VWTIYPDGSF
TVNDKSPLGL DGIVYFAKNF GNTATVTVYS PSNNPYFDYN YASDNEIKEQ IESAFAQLKG
TNNLDQIAQD NSNVGFSLNK IPENNISIVV THSDNPEKAY STVLKADGSK YSSDQLMTSR
TYHITVNGAN LGQIYSLPIS FISEITKAGV DVSKPDDITK PEEDKAQIYQ DQDKYEVLNN
NLNNAYPILY KGIRINNPEL MNYMKNNLAT WIDVKDDNNP NNELVGPAAY TLNVSVVNQP
TNLKPQNIAN GDSSGQQLDQ TILVIFQDLD ENNKNILSKD LTGLSGADAR YSTLSDIKAL
ENQHYELVSD DTKGQNLKFG NQKQVFYVKF RHVLKKEKQE SKSVSRNITY VDDKGNPVKG
SPDGKASYVQ SASFVRFPVK DLVTGVVGYS INNDGAIDTQ DGTHAWKATS SNYFEKVISK
DPASLGFEHV NYAVIPEETV DANTKDQEIQ VIYSGTTKKP EPTKPDKPNK PEKPETPNKP
DKPSEPSKPE MPSKPDKSSE SKSTEPEKLI HQATSDTSKN HSESTEKEDL SRSKVALDKT
SFSPLARRNT SLVNEKINTS ESSKDSTNLT KNRTANSNKE LPQTSSNAQQ SIDDEVIGSV
ALSIGLIGLA GVKKRKKAR
|
|---|
| |