| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_0934 |
|---|
| Symbol | |
|---|
| ID | 4439853 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus gasseri ATCC 33323 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008530 |
|---|
| Strand | + |
|---|
| Start bp | 927941 |
|---|
| End bp | 928702 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 639672789 |
|---|
| Product | ABC-type uncharacterized transport system, permease component |
|---|
| Protein accession | YP_814760 |
|---|
| Protein GI | 116629588 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0390] ABC-type uncharacterized transport system, permease component |
|---|
| TIGRFAM ID | [TIGR00245] conserved hypothetical protein TIGR00245 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00000000794066 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 55 |
|---|
| Fosmid unclonability p-value | 0.313327 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAATG TCATGGTAAG TAATTGGTCG CTTGTCTTTG CTTTTGCATT GGTTTTAGTT
TCGATTGCAA TTTCTGCTAA AGAAAAACTT GGTTTAACTA AAGACATTCT AATCAGCGTA
GTTCGAGCAA TCGTTCAGTT AATAGTTATC GGCTATGTTT TAAAGTTTAT TTTCCATGTA
AATAATTATT GGCTAACCTT TGCATCAACC TTAATTATTA TTTTTAATGC GTCGTGGAAT
GCTAATCAAA GAGACCCTAA TCCCGATAAA AAGTTTTATA ATTCTCTGAT TGCGGAAGCT
GCTGGTACAT ACGCCACTTT AGCGATCTTA ATTCTTTCAG GCGTGATTAA GCCAATTCCA
ATGCAAGTTA TTCCAATTAC AGGAATGATT GCAGGCAACG AAATGGTAGC TATTGGCTTG
TGCTATAAAT CTTTAAATGA AAGCTTTCGT GATTTACGGC AGCCGCTATT AGAGAAATTA
GCCTTGGGCA GTGATATTAA AACTGCTTCA ATGCCAATTC TAAGAAGAAG CATAAAAACT
GCGATGCAGC CAACGATCGA TTCAGCTAAG ACGGTTGGCT TAGTTAACTT ACCAGGGATG
ATGTCAGGAT TGATTTTTGC GGGAGTTAAT CCCATTTATG CTATTAAATA TCAAATTATG
ATTACATTTA TGCTTTTAGG AGCAACAAGT TTGGGAGCAG TGATTGCTGG ATATTTGGCC
TACCGAAATT ACTTTAATGA AAGAATGCAA TTAAAAGGTT GA
|
|---|
| Protein sequence | MKNVMVSNWS LVFAFALVLV SIAISAKEKL GLTKDILISV VRAIVQLIVI GYVLKFIFHV
NNYWLTFAST LIIIFNASWN ANQRDPNPDK KFYNSLIAEA AGTYATLAIL ILSGVIKPIP
MQVIPITGMI AGNEMVAIGL CYKSLNESFR DLRQPLLEKL ALGSDIKTAS MPILRRSIKT
AMQPTIDSAK TVGLVNLPGM MSGLIFAGVN PIYAIKYQIM ITFMLLGATS LGAVIAGYLA
YRNYFNERMQ LKG
|
|---|
| |