| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_0916 |
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| Symbol | |
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| ID | 4439940 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Lactobacillus gasseri ATCC 33323 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008530 |
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| Strand | + |
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| Start bp | 913680 |
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| End bp | 915761 |
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| Gene Length | 2082 bp |
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| Protein Length | 693 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 639672772 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_814743 |
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| Protein GI | 116629571 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000916095 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.000814664 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCTACTA AACGAAAAAA TAAAAAGAAT TTAGTTATTG TCGAGTCTCC ACATAAGGCT
AAGACAATTG AAAAATATTT AGGTAGAAAT TATCATGTTA TTGCTTCAAA AGGTCATATT
CGTGATTTAC CCAAGTCCCA AATGGGTGTT GACGTCGAAC ACGATTATGA ACCAAAGTAT
ATTTCTATTC GCGGAAAAGG CGATACGATT AAAGAATTAA AGAGCGAAGC CAAAAAGGCA
AAGTATGTTT ATCTCGCTTC CGACCCCGAT CGTGAAGGAG AAGCTATTGC CTGGCACGTT
GCTCATGCTT TGAATTTAGA TCCTAAAGAG CACAACCGTG TTGCTTTTAA CGAAATTACT
AAAGATGCGG TTAAAAATGC CTTTAAGAAT CCAAGAACCA TTGATATGGA TATTGTAGAT
GCTCAACAAG CACGTCGTGT TCTTGACCGC TTGGTGGGTT ATTCAATTAG TCCTATCTTG
TGGCAAAAAG TTAAGAAAGG CTTATCCGCT GGACGTGTTC AATCAATTGC CTTGAAGTTA
GTAATTGATC GTGAAAACGA AATTAAGAAC TTTAAGCCAG AAGAATACTG GACAATTGAT
GCTGATTTTG AAAAAGGTAA GGAAAAGTTC AAGGGAGCCT TTTATGGCAT TAAGGGTAAG
AAACAAGACT TACCAAATAA TGAAGCAGTT CAAGATATTT TAAAACAAAT TGATAAACGT
AAGAACTTTG AAGTTACCAA AGTAGTTAAA AAAGAAAGAA GACGTCAGCC TGCTGCGCCT
TTTACTACCT CAACTATGCA GCAAGAAGCT AACAAGCGTT TAGGATATCG TACTCGTCGA
ACAATGAGAA TTGCTCAATC TCTTTATGAA GGGGTTAACC TGGGTAAAGG ATCAGTTGGT
TTAATTACTT ATATGCGTAC TGATTCTAAA CGTATTGCTA ATGTTGCTAA GCATGAAGCT
TCAAAATTCA TCCATGAAGA ATATGGTGCA AATTATGCAG CAATCAAGCC GCAACATTTT
AAAAACGATG CTGATGCTCA AGATGCCCAC GAAGCAATTC GTCCAACTTC AGCTTTCAGA
ACGCCAGCTT CAGTTAAAGA ATATTTGACT ACTGAAGAAT ATCGTCTCTA CACCTTAATT
TGGTCAAGAT TTATTGCTAG TCAAATGACG CCAGCTGTTT ACGATACAGT AAGAGCTGAT
ATTGAACAAA ATGACGTTAC CTTTAGAACA ACTGGTTCAA AACTTAAGTT TGCTGGTTTT
ACTAAGGTTT ATGATAACCA AAAAGAAAAG AATAATGAAT TACCTGAGTT AAATGAAGGC
GATAAGGTTA AGCTTAAAAA GACCGATGAT CGTCAGCACT TTACTCAGCC ACCAGCAAGA
TATACTGAAG CCAGTTTAGT TAGAGCTCTT GAAGAAAATG GCGTTGGTCG TCCATCAACT
TATGCACCAA CAATTGATAC GATTCAAAAA CGTTATTACG TAAAACTTGA AGGAAGATCA
ATTGTACCGA CTGAATTAGG TGAAATTGTC GATAAGTTAA TCGAAGAATT CTTCCCAGAT
ATTGTTAACG TCGATTTCAC CGCTCAACTA GAAGATGATC TTGACGGCGT TGAAGTAGGA
AAGAAGAACT GGATCAAAGT AGTAGATGAA TACTACAAGC CATTTTCTAA AGAATTAGAC
AAGGCTGATC AACAAATTGA AAAAGTTCAA ATTAAGGATG AACCAGCTGG TTTTAACTGC
GACATTTGTG GTGCACCGAT GGTAATTAAG ATGGGACGTT ATGGTAAGTT TTATGCTTGC
TCGCGCTTCC CAGATTGCCG TAACACTAAG CCAATTGTTA AAAAGGTTGG CGTAACTTGT
CCTAAGTGTG GTAAGGGAGA AGTTATTGAA AAGAAGTCTA AACGTAATCG TAAGTTCTAT
GGCTGCTCTC GTTATCCAGA TTGTGACTTT GTATCTTGGG ATCAACCAAT TGGTCGTAAT
TGTCCAAATG ATGGTCATTT CTTAGTTCAA AAGAAGAATA AGAAGGGCTT AGTTATTCTT
TGCCCAAACG GCGATTATCG TGAAGAACCA GAAGAAAATT AA
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| Protein sequence | MPTKRKNKKN LVIVESPHKA KTIEKYLGRN YHVIASKGHI RDLPKSQMGV DVEHDYEPKY
ISIRGKGDTI KELKSEAKKA KYVYLASDPD REGEAIAWHV AHALNLDPKE HNRVAFNEIT
KDAVKNAFKN PRTIDMDIVD AQQARRVLDR LVGYSISPIL WQKVKKGLSA GRVQSIALKL
VIDRENEIKN FKPEEYWTID ADFEKGKEKF KGAFYGIKGK KQDLPNNEAV QDILKQIDKR
KNFEVTKVVK KERRRQPAAP FTTSTMQQEA NKRLGYRTRR TMRIAQSLYE GVNLGKGSVG
LITYMRTDSK RIANVAKHEA SKFIHEEYGA NYAAIKPQHF KNDADAQDAH EAIRPTSAFR
TPASVKEYLT TEEYRLYTLI WSRFIASQMT PAVYDTVRAD IEQNDVTFRT TGSKLKFAGF
TKVYDNQKEK NNELPELNEG DKVKLKKTDD RQHFTQPPAR YTEASLVRAL EENGVGRPST
YAPTIDTIQK RYYVKLEGRS IVPTELGEIV DKLIEEFFPD IVNVDFTAQL EDDLDGVEVG
KKNWIKVVDE YYKPFSKELD KADQQIEKVQ IKDEPAGFNC DICGAPMVIK MGRYGKFYAC
SRFPDCRNTK PIVKKVGVTC PKCGKGEVIE KKSKRNRKFY GCSRYPDCDF VSWDQPIGRN
CPNDGHFLVQ KKNKKGLVIL CPNGDYREEP EEN
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