| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_0887 |
|---|
| Symbol | |
|---|
| ID | 4439894 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus gasseri ATCC 33323 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008530 |
|---|
| Strand | + |
|---|
| Start bp | 879287 |
|---|
| End bp | 879886 |
|---|
| Gene Length | 600 bp |
|---|
| Protein Length | 199 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 639672743 |
|---|
| Product | transcriptional regulator |
|---|
| Protein accession | YP_814714 |
|---|
| Protein GI | 116629542 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1386] Predicted transcriptional regulator containing the HTH domain |
|---|
| TIGRFAM ID | [TIGR00281] segregation and condensation protein B |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 47 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.000000000000169803 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGAGACCAA TGGCAAGTAA AGAAGCACAA TTAGAAGCTC TCCTTTATGC AGCAGGGGAT
GATGGTTTAG AAACAGATAA TTTATTGCAA TTATTGGAAA TTTCACCATC GGCATTACGA
GAGTTAGCAA ATCATCTAAA AGATCGACTT AAAAATGATG AGAATTCAGG CTTACAACTG
ATCTGCATTA ATCACACTTA TAAATTAACT ACCAGTGCAG AATGCGGGGA CGTTATTTCT
AAATTTTTCC AAAAGGATTT ATCAAAGAAC CTAAGTCAGT CAGCTCTTGA AATTCTCTCA
ATTATTGCAT ATCGTCAGCC GATAACAAGG GTTGAAATTG ACGACTTACG AGGCGTTAAC
TCATCAGGAG CATTGCAGAC TTTAGTTTGG CGTGGACTAA TCAAAGTAAA TGGTAAAAAA
GATGTGCCTG GACACCCTAA TTTATATGTG ACTACAGACT ATTTCTTACA GTATTTTAAC
TATGAGAGTT TAGCTGATTT ACCAGTAATT GAAGAGTTTG AAGCAGATGA CAATCCTGTG
AACTTATTTG ATCAAGATGA GCAAAATAGC AAAGAAATAA ATTTTGATGA AGGAGAGTAA
|
|---|
| Protein sequence | MRPMASKEAQ LEALLYAAGD DGLETDNLLQ LLEISPSALR ELANHLKDRL KNDENSGLQL
ICINHTYKLT TSAECGDVIS KFFQKDLSKN LSQSALEILS IIAYRQPITR VEIDDLRGVN
SSGALQTLVW RGLIKVNGKK DVPGHPNLYV TTDYFLQYFN YESLADLPVI EEFEADDNPV
NLFDQDEQNS KEINFDEGE
|
|---|
| |