| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_0880 |
|---|
| Symbol | |
|---|
| ID | 4439887 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus gasseri ATCC 33323 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008530 |
|---|
| Strand | + |
|---|
| Start bp | 870262 |
|---|
| End bp | 873378 |
|---|
| Gene Length | 3117 bp |
|---|
| Protein Length | 1038 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 639672736 |
|---|
| Product | DNA polymerase III, alpha subunit |
|---|
| Protein accession | YP_814707 |
|---|
| Protein GI | 116629535 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0587] DNA polymerase III, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.191787 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.00000000000153929 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGGAACAG TTAGTTTGCA AAACCTTAGT AGCTTTACAT TATTGGAGAG TCCAACTAAA
GTTAAGGATT TAGCTGAAAA CGCAAAGAAA AAAGGTTATT CTGCACTTGC CTTGACGGAT
GTGAATATTA CTTATGGCTT AGTTAACTTT TATAAAGCAG CCAAAGAAAC TGGAATTAAG
CCTCTATTAG GGATGCAGTT AAGAATTAAT GGTTTGATTG ATCAGGCGAA TAAGTATGAT
TTAATTGTCA TAGCTAAAGA TGATCAAGGT TATAAAAATA TCTTACGTTT ATCAAGTGCA
GTTAATCTTT TAACCGAAAA TGGTGAAAAA GAAAATGTTT TAGAGCTTGA AGAATTAAAA
AAATATCTTG GTCATTTAGT TATAATTACG CCTAGTAATT TACATAGTGA ACTAAAGATG
CTGCAAACTA ATAATCCTAA TATGGGGGCT AATTATGTTC GTATACTGAA GGATGCTGTT
CCTACATCTT CATTAGTTTA CTTAGGTGTT TATGCAGATC AAGGACAGCA AGAATATATA
AATTATCTTC GTTCGTTAGC AACACAATTT GAACTGTCAT TAGCTGCAGT CGAAGATGGA
CAATATCTTA ATCGCAACGA GCAGTTCTTA AGAAGAACTT TGCAAGCTAT TAAAAGTAAC
ACCCATTTAG AAAATGTGGA GCAGTTAGCT AAGCAAGCTG GTTCGCACTA CTTAAAGACT
AGCGAAGAGT TACAGGTTAA TTATCGAAAA TTTGAAATCG AAGATGCTTT AGAAAATGCT
GAAAAAATAG GTCAACTTTG CAATGCTAAG ATTACATTTC AAGATCCACA GTTACCAAAA
TTCAAGCAAA ATAAATTTCC AACATCAAAA GAGTATTTGC ATTCATTGGC CCAAAATGGT
CTTGCTAAAA GATTTAAGGG ACAGATTCCG GAAAGATACC AAAAAAGATT AGATTATGAA
CTAAAAGTAA TCAATGAGAT GGGATTTGAT GATTATTTTC TTATTGTGTG GGATGTGATG
AACTTTGCCC ATAGTGTCCA TATTACAACT GGACCTGGTC GAGGCTCGGC TGCTGGCTCA
CTTGTCTCAT ATGCTTTAAG AATTACTGAA GTTGATCCGC TTGAATATAA CTTGCTATTT
GAACGTTTCT TAAATCCTGC TCGTCAGCAA ATGCCAGATA TTGACTTAGA TATTCCAGAT
AATCGACGTG ATGAAGTAAT CAAGTATATG TTTGAAAAAT ATGGGATGAA TCATGCCGCC
CAAATTTTAA CCTTTGGTAC TTTAGCTGCT AAGCAAGTTT TAAAAGATGT TTGTCGTGTT
TTTGGACTAA ACAAAGTTGA AACATATCGT TGGTTAGATG CAATTCCGCA TGCAAAAGGA
AAAATTACTT TAGCAGAAGC ATATCAAAAA TCAAAAGAAT TACAGCTTTT AGTTAATACA
AATACTTTTA GCAAAATTTT GTTTGCAACT GCTGAGCATT TAGAAAATTT ACCACGTCAT
TATTCAATTC ATGCAGCCGG TTTAGTAATT ACCGATGATT CATTAGCAGA GATCGTGGGC
TTACAGGCAG GCCCTTTAGG AATACCAGTA ACGCAGCAAA CGAAATTAAA CGTCGAGTCC
TTAGGATTAT TGAAAATTGA CTTTTTAGGC TTAAGAAACT TAACTATTTT GGGCAATATT
ATTGCAGCAT TAAAATCAGA GGGAGTTGAA ATTGATCCTA ATCAGATTCC GTTAAATGAT
CAAGAAACGC TTGCTTTATT TCAACGTGGT GATACAGATG CCGTCTTCCA GTTTGAATCT
GATGGGATTA AACGTGTTTT AGAGCAGCTT CATCCAGATA GTTTTGAAGA CATTGTTGCT
GTAAACGCCT TGTATCGCCC AGGTCCAATG AATAATATTG GACATTTCAT TAACAGAAAA
CATGGTAAGG AAAGAGTACA ATATCCCGAT CCTAGCTTGA AGAAAATCTT AGGACCAACT
TACGGTGTTT TAGTTTATCA AGAGCAAGTT ATGCAGACGG CTCAAGTCTT AGCTGGTTTT
TCTTTAGGTG AAGCCGATCT GTTAAGACGA GCCATGTCTA AGAAAAATGC GGATGTAATA
CAAAAAGAAA GGGAGAAGTT CATCCAAGGC GCCGTTAAAC TGGGCAGACG AAAAGAAGTA
GCAGAGCAGG TTTATGATTA TATTGCTCAG TTTGCTAATT ATGGTTTTAA CCGGTCGCAC
GCAGTTGCAT ATAGTAAAAT TGCCTTTTGG CTTGCCTACT TTAAAGTTCA TTATCCAGGT
GCTTTTTATC TTTCTCTTTT AAACAGTAAT ATTGGTAATC GTAATAAGAT TGCCCAATAC
TTGATGCAGG CTCAAGAAGC TGGAATTAAG ACTTTGCCAC CGGATATTGA GAACAGTCAG
GCAGATTTTT CACTTGAAAA TGGCAAAATT TTAGTCGGTT TGAAGGCAAT TCGCGGATTA
AGAAGTGATT TACTGAAGCA AATACTAGAA ATTAAACGGC CAATTAAATC AATGACAGAT
TTTTTGTGGA AGATTGATAA TAATTTACTG AGTGCTGATG CCATCGCAAA TTTAATTAAA
GCGGGCGCTT TTGATCGACT AGCTCCAAAT CGCAATGAAC TTTTGAAAAT AAATAAAGAC
TTGGTTGAAA GTGTAAAAAT GGCAGGTTCA AACTTATCTT TATTCGAAAC ATTGGAGCCA
AAAATTGAAG AGGAAAAAAT GCCGACTGCT GCTGAAAAAT CTGCAATGGA AGTGGAAGCA
ATGGGCTTTA GTACTGGTAT TAATCCAATC ATTGCCGTTC AAAAATATGC TAGAAAGTAT
AACGCGAAAA GGCTGCAAGC TTTTGAGAGT AACGAGCAGG GAATTGCGGT CGGAAAATTA
ATGAGGATAA AGCAAATCAC CACCAAAAAG GGTGACAATA TGGCTTTTGC CGTTTTTAGC
GATAGTAGTG GCGATAAAGA TTTTACAATT TTTCCTCAAG TATGGAAGAA AGTAGAAGAA
AACTTAAAGA TTGGCGATAT ATATTTATTG CAGGTGAAGA CACAAAGTGA TCGTTTTAGT
CCAACTAAGA CGCAATTTTT ACTTTCAAAT GCTCGCAAAG TTAATTTTAA AGATTAA
|
|---|
| Protein sequence | MGTVSLQNLS SFTLLESPTK VKDLAENAKK KGYSALALTD VNITYGLVNF YKAAKETGIK
PLLGMQLRIN GLIDQANKYD LIVIAKDDQG YKNILRLSSA VNLLTENGEK ENVLELEELK
KYLGHLVIIT PSNLHSELKM LQTNNPNMGA NYVRILKDAV PTSSLVYLGV YADQGQQEYI
NYLRSLATQF ELSLAAVEDG QYLNRNEQFL RRTLQAIKSN THLENVEQLA KQAGSHYLKT
SEELQVNYRK FEIEDALENA EKIGQLCNAK ITFQDPQLPK FKQNKFPTSK EYLHSLAQNG
LAKRFKGQIP ERYQKRLDYE LKVINEMGFD DYFLIVWDVM NFAHSVHITT GPGRGSAAGS
LVSYALRITE VDPLEYNLLF ERFLNPARQQ MPDIDLDIPD NRRDEVIKYM FEKYGMNHAA
QILTFGTLAA KQVLKDVCRV FGLNKVETYR WLDAIPHAKG KITLAEAYQK SKELQLLVNT
NTFSKILFAT AEHLENLPRH YSIHAAGLVI TDDSLAEIVG LQAGPLGIPV TQQTKLNVES
LGLLKIDFLG LRNLTILGNI IAALKSEGVE IDPNQIPLND QETLALFQRG DTDAVFQFES
DGIKRVLEQL HPDSFEDIVA VNALYRPGPM NNIGHFINRK HGKERVQYPD PSLKKILGPT
YGVLVYQEQV MQTAQVLAGF SLGEADLLRR AMSKKNADVI QKEREKFIQG AVKLGRRKEV
AEQVYDYIAQ FANYGFNRSH AVAYSKIAFW LAYFKVHYPG AFYLSLLNSN IGNRNKIAQY
LMQAQEAGIK TLPPDIENSQ ADFSLENGKI LVGLKAIRGL RSDLLKQILE IKRPIKSMTD
FLWKIDNNLL SADAIANLIK AGAFDRLAPN RNELLKINKD LVESVKMAGS NLSLFETLEP
KIEEEKMPTA AEKSAMEVEA MGFSTGINPI IAVQKYARKY NAKRLQAFES NEQGIAVGKL
MRIKQITTKK GDNMAFAVFS DSSGDKDFTI FPQVWKKVEE NLKIGDIYLL QVKTQSDRFS
PTKTQFLLSN ARKVNFKD
|
|---|
| |