Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | LGAS_0820 |
Symbol | hrcA |
ID | 4439999 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Lactobacillus gasseri ATCC 33323 |
Kingdom | Bacteria |
Replicon accession | NC_008530 |
Strand | + |
Start bp | 803124 |
End bp | 804182 |
Gene Length | 1059 bp |
Protein Length | 352 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 639672677 |
Product | heat-inducible transcription repressor |
Protein accession | YP_814649 |
Protein GI | 116629477 |
COG category | [K] Transcription |
COG ID | [COG1420] Transcriptional regulator of heat shock gene |
TIGRFAM ID | [TIGR00331] heat shock gene repressor HrcA |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00000704325 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 59 |
Fosmid unclonability p-value | 0.585042 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTGACTG AACGGCAAGA ACTTATTTTA AAGACTATTA TCATGGACTT TACTCAGTCT CATGAGCCGG TAGGTTCTAA GACCGTGATG AATCAACTGC CTGTCAAGGT CTCAAGTGCT ACAGTTCGAA ATGAAATGGC GGCACTAGAA GAAAAGGGAC TGCTTGAAAA GACTCACTCT TCAAGTGGGA GAATTCCTTC GACTGCTGGT TATCGATATT ACTTAGATCA TTTGATTAAT CCAGTAAAGA TACCAGCATC CGTCTATAAC CGAATTATTT ATCAATTAGA CCAACCCTTT CAACAAGTTA ATGAAATCGT ACAAGAAGCT GCAAAAATTC TGTCTGATTT AACTAATTAC ACTGCTTTTG CCGCAGGTCC CGAAACTCGT TCGGTTAAAG TAACTGGTTT TAGGATCGTT CCTCTTTCAA GCCATCAAGT GATGGCAATA TTAGTTACGG ATGACGGTAA TGTAAAGAAT CAAATCTATA CTTTACCGCA TCATACAAAT GGGGAAGAGA TTGAAAAAGC AGTTCGACTA ATTAATGATC AATTAGTTGG AAAGCCACTT AGTTCAGTTA ATGAAGTGTT ACTTAAGAGA ATTGCAGATC ATCTGGTTGC TGGAGGCTCA GCACCTGAAA TTTTGGATTT GCTTCAAGAT GTTATTAAGG ATGCTGCTAG TGAGCAAATG TATGTAGATG GTCAGATTAA TCTTTTGAGT AATTATGAGA GCGATGATTT AGCTAAAGTT AAATCTCTCT ACAAATTAAT TGATCAAAAT GATGCTATTT CAAGCTTGAT TGGTTTTAAT CCTAAAGATG AAATTAAAAA TGATTCAAAG TCGAAAGTTC AAGTTAAGTT AGGCTCTGAA TTGCAATCAG ATTTACTTGA AGATTATAGT TTGTTGACTG CACAATATAG CGTTGGTAAG TACGGTAAAG GAACAATAGC ACTACTTGGA CCAACTAACA TGCCATACTC GCAGATGATC GGATTACTCG AGTATTTTAG GAACGAACTA GCAAAGAAAT TGTTAGATTA TTATGGTAGA TTTAAGTAA
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Protein sequence | MLTERQELIL KTIIMDFTQS HEPVGSKTVM NQLPVKVSSA TVRNEMAALE EKGLLEKTHS SSGRIPSTAG YRYYLDHLIN PVKIPASVYN RIIYQLDQPF QQVNEIVQEA AKILSDLTNY TAFAAGPETR SVKVTGFRIV PLSSHQVMAI LVTDDGNVKN QIYTLPHHTN GEEIEKAVRL INDQLVGKPL SSVNEVLLKR IADHLVAGGS APEILDLLQD VIKDAASEQM YVDGQINLLS NYESDDLAKV KSLYKLIDQN DAISSLIGFN PKDEIKNDSK SKVQVKLGSE LQSDLLEDYS LLTAQYSVGK YGKGTIALLG PTNMPYSQMI GLLEYFRNEL AKKLLDYYGR FK
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