Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | LGAS_0544 |
Symbol | |
ID | 4440254 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Lactobacillus gasseri ATCC 33323 |
Kingdom | Bacteria |
Replicon accession | NC_008530 |
Strand | + |
Start bp | 573929 |
End bp | 575434 |
Gene Length | 1506 bp |
Protein Length | 501 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 639672401 |
Product | ABC-type amino acid transport system, permease and periplasmic component |
Protein accession | YP_814379 |
Protein GI | 116629207 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0765] ABC-type amino acid transport system, permease component [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0576109 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 7.662799999999999e-28 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGAGCGTAA TGAAGAAAAC AAAACTATTT AGCTTCTTCT TTGCATTTCT ACTCTTCTTC TCACTTGGTG CCGCTTTTAT TCAACCAGCT CAAGCAGCTA GTGAAAAAAA GGTTGCAGAA GGCAGCGTTT TAAAGAAGAT TAAGAAGAGT GGAGAGCTAG TAGTTGGTAC ATCTGCCGAC TATCCACCGT TAGAGTTTAC AGCAAGTGAA AACGGTAAGA CTAAATATGT TGGAGTCGAT ATTGAATTAG CTAAAGACAT TGCACAAGAC TTGGGCGTTA AGCTTGTTAT TAAGAATATG TCTTTTGACT CGTTGTTAGT TGCACTTGAA ACAGGAAAGG TAGACATGGT TATTTCTGCT ATGACACCTA CTCCTGAAAG AAAACAAAGT GTGGCTTTTT CAAAAATTTA CTACAAGCCA AGTGGTGAAT ATTTTTTAGT AAATAAAAAA GATAAGGATA AATATACAAG CATCCAAAGC CTTAAGGGTC AAGCTATTGG TGCGCAAACA GGAAGCAACC AATATAATTT AGTTAAATCG CAAATGAAAG ATTCTAAGTT AAAAGGCCTT GGGAAAATTA ATAACTTGGT CTTAGCTTTA CAATCTGGTA AGGTTTCGGC AGTTGTCGTT GAAGAATTAA TCGCTAAAGC TTATGCGGAA AACAATAATA GCTTAGCCGC AGTACGTTCA AACTTGAAAG AAACACAGTC TGGTAATGCA GTAGCAATTG CCAAGGGACA AGATGAATTA GTTGCTCAGG TGAATAAAAC TATTGATCAT GTTCAAAAGA AAGACTTAAT TAATAAACAA TATCTTCCAG CAGCTGCCAA ATATATGAAA ACGGAAAAGA AAAGTAATAC TTTTGCTAAA TATATTCCAT ACTTCTTCAA GGGCATCTGG TACACAATTG TAATTACTGT CTTTTCTGTC ATTATTGGTA TTGTTTTAGG AATTATTTTA GCTTTAATGC GCCTGTCTAA GAATCCAATT TTACACTGGC TTGCCGTTTG CTACATTGAA TTTATTCGTG GTACGCCTCA AATGGTTCAA ATTTTGTTTG TATACTTTGG AATCGGATAT TTAATTTCTA ATCTGTCAGC TTTAGTTGCT GGTATTATCG CTATCGGTCT TAATTCTGGA GCTTATGTGG CTGAGGATAT TAGGTCAGGA ATCGATTCTT TGCCAAAAGG ACAAATGGAA GCAGCACGTT CCTTAGGCTT AAGTCGTCAG AAAGCATTTA GATATGTAAT TATTCCTCAG GCAATAAAGA ATATTTGGCC AGCCTTAGGT AATGAATTTA TTACTTTATT GAAGGATAGT TCCTTGGTTT CAGTAATTGG AGTAGCTGAA TTAATGTATC AAACACAATT GGTTCAGACT TCAACTTATA AGGGTGTATT ACCATTATTC ATTGCCATGA TTATTTACTT TATTATGACT TTCTCATTAA CGAGATTGTT GAATCATTTT GAAAAGAGGA TGAAGCGTAA TGACAGCAAT GATTAA
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Protein sequence | MSVMKKTKLF SFFFAFLLFF SLGAAFIQPA QAASEKKVAE GSVLKKIKKS GELVVGTSAD YPPLEFTASE NGKTKYVGVD IELAKDIAQD LGVKLVIKNM SFDSLLVALE TGKVDMVISA MTPTPERKQS VAFSKIYYKP SGEYFLVNKK DKDKYTSIQS LKGQAIGAQT GSNQYNLVKS QMKDSKLKGL GKINNLVLAL QSGKVSAVVV EELIAKAYAE NNNSLAAVRS NLKETQSGNA VAIAKGQDEL VAQVNKTIDH VQKKDLINKQ YLPAAAKYMK TEKKSNTFAK YIPYFFKGIW YTIVITVFSV IIGIVLGIIL ALMRLSKNPI LHWLAVCYIE FIRGTPQMVQ ILFVYFGIGY LISNLSALVA GIIAIGLNSG AYVAEDIRSG IDSLPKGQME AARSLGLSRQ KAFRYVIIPQ AIKNIWPALG NEFITLLKDS SLVSVIGVAE LMYQTQLVQT STYKGVLPLF IAMIIYFIMT FSLTRLLNHF EKRMKRNDSN D
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