| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_0538 |
|---|
| Symbol | |
|---|
| ID | 4440248 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus gasseri ATCC 33323 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008530 |
|---|
| Strand | + |
|---|
| Start bp | 567937 |
|---|
| End bp | 568827 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 639672395 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_814373 |
|---|
| Protein GI | 116629201 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.184942 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 3.68411e-16 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGACTGCTC AAGAGAAAGC CGCAATCAAG AATTGGAATC CCCGATATCG GAGAAATGTC
TATTTATATC TATGGATTTA CGGAATTTTA GGTGCGGTAA CTGGAATTAC TAATGATGCA
GCTTTGTCAT ACTTTGATAT AGTAGCACCA GGATTAATTT CAGGTTTGAA TATCTTTAAT
GCAATTACTG CATTATTAAT GTCGTTGATG ATTGTTTGGG TACATGAATT AGGTTATCGC
AAAATTTTGT TGATTTTGCC GCCTTTAACT TCTATTTTTC TGGCGTTGAC TACTATTACA
ACTAACCAAA TAGTTATTAT GTTTGCTTAC ATTATTTCAT GGACTGCAAT TGGAGTTTAT
GACTTAATGT ATCCTCTAAT GTGGACTTCT TATGTTCCTA AAGAAATTAG AACTAAGATG
TTTACGGTAG TAATGGTTGT AAACTTAGTT GCGCAAACCA TCTTAACTTT CATTGGTGGG
AAGGCAGTAG TGTACTTTTT TAGCAAGATG CAGAGTATTC CTTATGATAC TGCTTCTAAT
CTATCTGCTC ATACTGCTCA ACTAAGTGGA AGTTATCTAG CTAATTATAC TAATGCCTTT
AGAATAGTAT TGATTTTGAC TGCTTTAGTT AATGTAGTTG CTTTTGTATT GGCAATATTT
ATTAAAGATG AGCCAAAGGA CTATCGAACC GTTGGGATGA AGAAACCGCA AACGCCAGAA
GAGAAGAAGA AAGCTTTTGA AGCCTTAATT AATAAAAAGA CGATTATGTG GATTCTGTAC
ATTGCAGGTA TTCAACTAGG TGCAAGATTG GTTGTTCCTT ATATACCAAT TTATTTGAAT
GATTATCTGC ATATTCCCCG GGGAATTACT TCAACGATAA ATACCTTTTA G
|
|---|
| Protein sequence | MTAQEKAAIK NWNPRYRRNV YLYLWIYGIL GAVTGITNDA ALSYFDIVAP GLISGLNIFN
AITALLMSLM IVWVHELGYR KILLILPPLT SIFLALTTIT TNQIVIMFAY IISWTAIGVY
DLMYPLMWTS YVPKEIRTKM FTVVMVVNLV AQTILTFIGG KAVVYFFSKM QSIPYDTASN
LSAHTAQLSG SYLANYTNAF RIVLILTALV NVVAFVLAIF IKDEPKDYRT VGMKKPQTPE
EKKKAFEALI NKKTIMWILY IAGIQLGARL VVPYIPIYLN DYLHIPRGIT STINTF
|
|---|
| |