Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | LGAS_0534 |
Symbol | |
ID | 4440244 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Lactobacillus gasseri ATCC 33323 |
Kingdom | Bacteria |
Replicon accession | NC_008530 |
Strand | - |
Start bp | 563307 |
End bp | 564209 |
Gene Length | 903 bp |
Protein Length | 300 aa |
Translation table | 11 |
GC content | 32% |
IMG OID | 639672391 |
Product | transcriptional regulator |
Protein accession | YP_814369 |
Protein GI | 116629197 |
COG category | [K] Transcription |
COG ID | [COG2188] Transcriptional regulators |
TIGRFAM ID | [TIGR02404] trehalose operon repressor, B. subtilis-type |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.207932 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.0000000000234574 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | TTGAAAGTAT CCGCTTTCAT TAATCTTGAC TTAAATACTA TACTTGTCTG TACAAGTTGT CAATACTATT TTATGAAAAA GCTTACTTTT CTTTTAAATA AGCATTTTGT AGATAATAAA GTTTTTCTTT ACTTGTCTAA ACAAGTGTAT ATAATTAAAG ACAAAGGAGG ATTTTTTATG GCTCAATCCA AAGTTAGTGC TATTGCTCAA GACTTAGTAG ATAAAATTAA GCATCAACAA TATAAACCTG GCGAATATCT CCCTAGTGAA CATCAATTAA TGGACTTATA TGGGGCTTCA AGAGAAACAA TTCGCAAAGC ACTTACTAGC TTAACTGACT TAGGCTTAAT TCAAAAAATT CGCGGAAAAG GCTCAATAGT TTTAAATCTT GATCGCTACG CTTTTCCTAT TTCAGGAATT AGCAGTTTCG CTGAATTGAA CAATCAATTA GGACTTAAGG CGGAAACAAA AGTTTTACTT TTACAAAAAG AAGAACATTT ACCTACTGGC TTTATCAAAT ATTTTCCTGA AGAAAAAAAC AGTGCCGGTT TTCATCTTGA ACGCTTGCGA TTAATAGAAG GACAAGCTGA TGTCTTAGAT TGCGACTATT TGCTTTCACC TCCTATTAAT TCACTTCCAA AAGATGCTGC AAAAACTTCT ATTTATAATT ATTTAGAAAA TAAAGAAAAA TTAGAAATTT CCTATGCAAC GAAAGAAATT TCTGTCTGCA CAGTTAACCA AAGAATTCGA GATTTACTTC AACTAGATAA CGAACTCGCA GTGCTGGTCG CAAGCAGAAA TTATTTAGCT GATACAACTA AATTTGAACT AACTCTGTCA TATCATCGAC CTGATAAATT CAAGTTTGTT GATTTTGCTC GAAGAAAAAA GATTAAATTT TAG
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Protein sequence | MKVSAFINLD LNTILVCTSC QYYFMKKLTF LLNKHFVDNK VFLYLSKQVY IIKDKGGFFM AQSKVSAIAQ DLVDKIKHQQ YKPGEYLPSE HQLMDLYGAS RETIRKALTS LTDLGLIQKI RGKGSIVLNL DRYAFPISGI SSFAELNNQL GLKAETKVLL LQKEEHLPTG FIKYFPEEKN SAGFHLERLR LIEGQADVLD CDYLLSPPIN SLPKDAAKTS IYNYLENKEK LEISYATKEI SVCTVNQRIR DLLQLDNELA VLVASRNYLA DTTKFELTLS YHRPDKFKFV DFARRKKIKF
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