| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_0531 |
|---|
| Symbol | |
|---|
| ID | 4440276 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus gasseri ATCC 33323 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008530 |
|---|
| Strand | + |
|---|
| Start bp | 560006 |
|---|
| End bp | 560656 |
|---|
| Gene Length | 651 bp |
|---|
| Protein Length | 216 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 639672388 |
|---|
| Product | ABC-type amino acid transport system, permease component |
|---|
| Protein accession | YP_814366 |
|---|
| Protein GI | 116629194 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 0.0001634 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAACT TTATTCATGC ATATTCTTGG ATTAACATTC GCTTTCTCTT ACAAGGTTTG
TGGGTGACTA TATATGTATC CTTAATATCA ATTGCCTTGA GTTTTATTCT AGGGCTAGTA
TTTGGTTTTA TTCGATATGT GAAGATTAAG TATCTTTCAG CTGTTGTTGG TTTTGTGATT
GATATTATAA GAAATTTACC GCTATTGTTG ATAATCTTCT TTACGTACTT TGGATTGCCA
GAGTTAGGAA TTGTTACTAA TCCAACAGTA GCATCGATTA TTGCTCTAGT AGTATTTGAA
GGAGCCATGC TTGCTGAAAT TGTCAGAAGT GGTATTGCTG CTGTGGATCC GGGACAAATG
GAAGGAGCTC GTTCAAACGG GATGACCTAT ATGCAGGCGA TGTATCATGT GATCATTCCG
CAAGCTCTTA ATAAGATGAT CCCGTCTCTT TTGTCACAAT TCGTTTCATT AGTTAAAGAC
ACGTCACTTG CAACAATTAT TGTTTTGCCA GAGTTATTGT TCCATGCGCA AATTATTTAT
AGTCAAAATA CAACCTACTT AATTCCAATG TATGTAATTA TTGCAATTAT GTATTTCATT
GTTTGTTTCT CACTCTCAAT GATTGCTAAG CATTTGCAAA GTAAGTATTA A
|
|---|
| Protein sequence | MENFIHAYSW INIRFLLQGL WVTIYVSLIS IALSFILGLV FGFIRYVKIK YLSAVVGFVI
DIIRNLPLLL IIFFTYFGLP ELGIVTNPTV ASIIALVVFE GAMLAEIVRS GIAAVDPGQM
EGARSNGMTY MQAMYHVIIP QALNKMIPSL LSQFVSLVKD TSLATIIVLP ELLFHAQIIY
SQNTTYLIPM YVIIAIMYFI VCFSLSMIAK HLQSKY
|
|---|
| |