| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_0404 |
|---|
| Symbol | |
|---|
| ID | 4438877 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus gasseri ATCC 33323 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008530 |
|---|
| Strand | + |
|---|
| Start bp | 422614 |
|---|
| End bp | 423279 |
|---|
| Gene Length | 666 bp |
|---|
| Protein Length | 221 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 639672262 |
|---|
| Product | Rossmann fold nucleotide-binding protein |
|---|
| Protein accession | YP_814247 |
|---|
| Protein GI | 116629075 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1611] Predicted Rossmann fold nucleotide-binding protein |
|---|
| TIGRFAM ID | [TIGR00725] conserved hypothetical protein, DprA/Smf-related, family 1
[TIGR00730] conserved hypothetical protein, DprA/Smf-related, family 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 48 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 0.115936 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTGCATTT TTTTATACAC TTTTATTTGT AATCAGAGTG GAAATAATTT TAAGATAAAT
AGGCATAGAA TTTTTAAATT TAGAAATAAG GTAGATAAAA TGATTAAAAA GATTGCAGTT
TATTGTGGCG CACGCTCAGG TAACCGTCCT GGATATGCGA AAGCTGCTTA TGAATTTGGT
AAAAAAATGG CAAACCACCA GATTGAGCTA GTTTATGGCG GCGGTAAGTA TGGTTTAATG
CGAGCAGTTG CTGACGGAGT TTTAGAAAAT GGCGGTATTG TTCATGGCAT TATTACTGAA
GAATTAAAAG ACCGCGGTGC AGCTTACGAT AAGGTGCAAG ATTTTCGCGT GGTGCCAAGT
ATGGATAAGC GAAAAGATAC GATGATGAAT TTAGCTGATG GGATGGTAGC TCTTCCTGGC
AGTATTGGTA CTTTGGAAGA GATCAGTCAA GCGATTTCTT GGACGGCAAT TGGCGATAAT
GCTAAGCCCG TTGCTTTTTA TGATTATGCT GGCTTTTATG ACTATTTAGA TAAGCTATTA
AAGCGCATGA ATCAGGATGA TTTTTTAGAA AATATTTACT TAGATACAGT TTATTTTGGA
ACCGATTTTG ATAAGATTCT GCAGTTTATG GAAGATTATC AGGCTCCGGC TTATCGAAAA
TATTGA
|
|---|
| Protein sequence | MCIFLYTFIC NQSGNNFKIN RHRIFKFRNK VDKMIKKIAV YCGARSGNRP GYAKAAYEFG
KKMANHQIEL VYGGGKYGLM RAVADGVLEN GGIVHGIITE ELKDRGAAYD KVQDFRVVPS
MDKRKDTMMN LADGMVALPG SIGTLEEISQ AISWTAIGDN AKPVAFYDYA GFYDYLDKLL
KRMNQDDFLE NIYLDTVYFG TDFDKILQFM EDYQAPAYRK Y
|
|---|
| |