| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_0285 |
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| Symbol | |
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| ID | 4438725 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Lactobacillus gasseri ATCC 33323 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008530 |
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| Strand | + |
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| Start bp | 325155 |
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| End bp | 328826 |
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| Gene Length | 3672 bp |
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| Protein Length | 1223 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 639672144 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_814129 |
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| Protein GI | 116628957 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.00000000001636 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGATCGACG TAAATAAGTT TGAAAGTATG CAAATTGGTT TGGCTTCTCC AAACAAGATC
AGAAGTTGGT CTTATGGCGA AGTTAAAAAG CCAGAAACTA TCAACTATCG TACTTTGAAA
CCAGAAAAAG ATGGTTTGTT CGATGAAAGA ATTTTCGGAC CAACTAAGGA CTGGTCTTGT
GCTTGTGGTA AGTACAAGGG TATTCGCTAT CGCGGTATTG TGTGTGACCG GTGTGGTGTA
GAAGTTACTT CTGCTAAAGT TAGAAGAGAA CGTATGGGCC ACATCGAATT AGCTGCACCA
GTTTCACATA TCTGGTATTT CAAAGGTATT CCATCTCGTA TGGGATTAGT GTTAGATATT
TCACCTCGTG CACTTGAAGA AGTAATATAT TTTGCTGCTT ATATTGTAAT TGACGCAGGT
GATACTGATC TTGAAGATAA ACAACTTCTT ACAGAAGCTG AATATCGTGA AAAGAAAGCA
AAATTCGGTA ACCGTTTTGA AGCTAAGATG GGTGCTGAAG CTGTAAAGGA ACTTCTTGAA
CAAGTAGATA TTGACAAAGA AGTTCATGAT TTAAAAGAAG AATTAAAGAC TGCTACTGGT
CAAAAGAGAA CTCGTGCTAT CAGAAGATTA GATATCTTAG ATGCATTTAA GAATTCAGGT
AATAAGCCTT CATGGATGGT TATGGATTGT ATTCCAGTTA TTCCGCCTGA TTTAAGACCA
ATGGTTCAAC TTGATGGTGG TCGTTTCGCA ACTTCTGATT TGAATGATTT ATATAGACGT
GTAATTAATC GTAATAATCG TTTAAAGAGA TTGTTAGACT TAAATGCACC TAGAATTATC
GTTCAAAATG AAAAACGTAT GCTTCAAGAA GCTGTAGATG CATTAATTGA TAACGGTAGA
CGTGGTCGTC CAGTTGTAGG ACCAGGTAAC CGTCCACTTA AATCTCTTTC TCATATGTTA
AAGGGTAAGC AAGGACGTTT CCGTCAAAAC TTGCTTGGTA AGCGTGTCGA CTACTCAGGT
CGTTCAGTTA TCGATGTTTC ACCTAAGTTG AAGTTTTATC AATGTGGTGT TCCACGTCCA
ATGGCTTTAG AGTTGTTTAA GCCATTTGTG ATGCATGAAT TAGTAAAACG TGGTTTAGCA
TCTAACATTA AGAATGCTAA GCGCAAGATT GATCGTGAAG ATGACGATAT CTGGGACATC
TTAGAAGATG TAATTAAAGA AAGACCAGTT CTTTTGAACC GTGCACCTAC TCTTCACCGT
TTAGGTATCC AAGCATTCGA GCCAGTTTTG GTACCTGGTA AATCAATTCG TCTTCACCCT
CTTGCTTGTG AAGCCTATAA CGCCGACTTC GATGGTGACC AGATGGCCAT TCACGTTCCA
TTATCTGATG AAGCTGTAGC AGAATCACGT TTGCTTATGC TTGCTGCTCA CCATATCTTG
GCTCCTAAGG ATGGTAAGCC AATTGTTACT CCTTCTCAGG ATATTGTTTT AGGTAATTAC
TGGTTAACTC AAGCAGAACG TGGTCGCGAA GGCGAGGGTA TGATTTTTGA CTCACCAGCT
GAAGCAGCTA TTGCATATGC AAATGGTGAT ATTCACTACC ATACTCGCAT TGGTTTAGCA
GCTGATTCAA TGCCTGAAAA GCCATGGCCA AAGGGATATG AACACGGAAT TTTTGTAACT
ACCTATGGTA AGTTAGTCTT CAACCAAATT TTCCCTAAGG ATTTCTTCTA TATTAATGAT
CCTACTCAAG AAAATCTTAC CCATCCCGTA GATGAAAGAT ATTTCTTGCA ACCAGGTGAA
GATATCCATG AAAAGCTAGA TAATATGAAA CTTGGAAAGG CCTTTAAGAA AGGTTTCTTA
TCAGATTCTA TTGCTCAAAT TTACAAGGAT TATAAGGTTC AAAGAACTTC TGATTTCTTG
GATGACTTGA AGGAATTAGG CTACACTGTA TGTACTACTT CTGGTTTGAC TATTGGTGTT
GAAGATATTC CTACAATTAC TGATAAGGAC GATATTGTGG CAGAAGCTCG TAAGAAGGTT
GACGTGGTTT CTAAGCAATA TCGTCGTGGT TTGATTACTG ATGAAGAACG ACATGATCGA
GTGATTAGCA TTTGGAATAA TTGTAAAGAT ATTGTTCAAA ATGAAATTGC TCAAATTCAT
GCTCCAAGAA ACCCAATCAC AATCATGGCA GATTCCGGTG CTCGTGGTAA CATTTCTAAC
TTTACCCAGC TTGCTGGTAT GCGTGGCTTG ATGGCTGCTC CTAACGGAGG AATGATGGAA
ATTCCTGTTA CATCAAACTT CCGTGAAGGA TTATCCGTTT TGGAAATGTT CATGTCCACT
CACGGTGCTC GTAAAGGTAT GACCGATACC GCGTTGAAGA CTGCTAACTC AGGTTACTTA
ACTCGTCGTT TGGTAGACGT AGCTCAAGAC GTTATTATTC GTGAAGAAGA TTGTGGTACT
GATCGTGGCT TGACTGTTCA TGCAATTACT GAAGGCGATG AAATGATTGA ACCATTATTT
GATCGTCTAG TAGGCCGCTA TACTTCTAAG AGTGTCTATG ATCCAGAAAC TCATGAAGTT
ATCTGCCCAG CAGATGTCTT GATGGATGAA GATATGGCTC ATAAGATTGT TGATGCTGGC
GTCACTGAAG TAACTATTCG CTCCGTGTTT ACTTGCAACA CTCAACACGG TGTATGTAAG
AAATGTTATG GTATGAACCT TGCTACTGGT GACGATGTTG AAGTTGGTGA AGCAGTAGGT
ACTGTTGCTG CTCAATCTAT CGGTGAACCT GGTACTCAGT TAACTATGCG TAACTTCCAC
AACGGTGGTG TTGCTGGTGC TGCAGATATT ACTCAAGGTT TACCTCGTGT TCAAGAATTG
TTTGAAGCTC GTAACCCTAA GGGACGTGCA ACAATTTCTG AAGTAACTGG TGAAATAACT
TCAATTGAAG AAGATCCAGC AGAACACACT CGTCAAATTA CTGTAAAAGG TCAAACAGAT
ACTCGTACTT ATGATGTACC ATATACTGCA TCTGTAGCAG TTGCTGAAGG TGACCATGTT
GTACGTGGAG ATAAATTGAC TCTTGGTTCT ATCGATCCTA AAGAATTGAT TCGTGTACGT
GATGCATTGA CTACTGAAAA ATACATTCTA AGTGAAATTC AAAAAGCTTA TAGAATGCAG
GGTGTAGAAA TTGCTGATAA ACACGTTGAA GTTATGGCAC GTCAAATGCT TCAAAAGGTT
CGTATTCTTG ATCCAGGTGA AACTGATATC TTACCAGGTG AATTGATGGA TATTGGTGAA
TTTAAGGCAA GAAACCGTGA AGTAATTATT TCTGGTGGTA TTCCTGCAAC AGCACAAAGT
GTAATTCTTG GTATTACCAA GGCCGCTCTT GAAACTAACA GTTTCTTGTC TGCAGCTTCA
TTCCAGGAAA CTACTCGTGT TCTTACTGAT GCTTCTATTC GTGGAAAGAA CGATCCATTA
CTTGGTCTTA AGGAAAATGT TATTATCGGT AAGATTATTC CTGCCGGTAC TGGTATGCCT
GTTTACCGTG AAATGGAACC TAAGGTTGAC GTTCCTGAAG ATGAAAAGAA AAAGTCAGTT
TATTCTATAG CTGATATTGA GAAGAAATTA GCCGCAGCTG ATGCAGAGAA AGATAAAGGC
TCAGCTGACT AA
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| Protein sequence | MIDVNKFESM QIGLASPNKI RSWSYGEVKK PETINYRTLK PEKDGLFDER IFGPTKDWSC
ACGKYKGIRY RGIVCDRCGV EVTSAKVRRE RMGHIELAAP VSHIWYFKGI PSRMGLVLDI
SPRALEEVIY FAAYIVIDAG DTDLEDKQLL TEAEYREKKA KFGNRFEAKM GAEAVKELLE
QVDIDKEVHD LKEELKTATG QKRTRAIRRL DILDAFKNSG NKPSWMVMDC IPVIPPDLRP
MVQLDGGRFA TSDLNDLYRR VINRNNRLKR LLDLNAPRII VQNEKRMLQE AVDALIDNGR
RGRPVVGPGN RPLKSLSHML KGKQGRFRQN LLGKRVDYSG RSVIDVSPKL KFYQCGVPRP
MALELFKPFV MHELVKRGLA SNIKNAKRKI DREDDDIWDI LEDVIKERPV LLNRAPTLHR
LGIQAFEPVL VPGKSIRLHP LACEAYNADF DGDQMAIHVP LSDEAVAESR LLMLAAHHIL
APKDGKPIVT PSQDIVLGNY WLTQAERGRE GEGMIFDSPA EAAIAYANGD IHYHTRIGLA
ADSMPEKPWP KGYEHGIFVT TYGKLVFNQI FPKDFFYIND PTQENLTHPV DERYFLQPGE
DIHEKLDNMK LGKAFKKGFL SDSIAQIYKD YKVQRTSDFL DDLKELGYTV CTTSGLTIGV
EDIPTITDKD DIVAEARKKV DVVSKQYRRG LITDEERHDR VISIWNNCKD IVQNEIAQIH
APRNPITIMA DSGARGNISN FTQLAGMRGL MAAPNGGMME IPVTSNFREG LSVLEMFMST
HGARKGMTDT ALKTANSGYL TRRLVDVAQD VIIREEDCGT DRGLTVHAIT EGDEMIEPLF
DRLVGRYTSK SVYDPETHEV ICPADVLMDE DMAHKIVDAG VTEVTIRSVF TCNTQHGVCK
KCYGMNLATG DDVEVGEAVG TVAAQSIGEP GTQLTMRNFH NGGVAGAADI TQGLPRVQEL
FEARNPKGRA TISEVTGEIT SIEEDPAEHT RQITVKGQTD TRTYDVPYTA SVAVAEGDHV
VRGDKLTLGS IDPKELIRVR DALTTEKYIL SEIQKAYRMQ GVEIADKHVE VMARQMLQKV
RILDPGETDI LPGELMDIGE FKARNREVII SGGIPATAQS VILGITKAAL ETNSFLSAAS
FQETTRVLTD ASIRGKNDPL LGLKENVIIG KIIPAGTGMP VYREMEPKVD VPEDEKKKSV
YSIADIEKKL AAADAEKDKG SAD
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