| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_0284 |
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| Symbol | rpoB |
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| ID | 4438724 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Lactobacillus gasseri ATCC 33323 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008530 |
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| Strand | + |
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| Start bp | 321501 |
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| End bp | 325139 |
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| Gene Length | 3639 bp |
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| Protein Length | 1212 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 639672143 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_814128 |
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| Protein GI | 116628956 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.000000140323 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTTTCTT TGTTAGGACA CGCTGTGAAC TACGGTAGTC ACCGGACAAG ACGTAGCTTC
TCTCGAATTA AAGAAGTATT GAAGTTACCT AACTTGACTG ATGTGCAAAC GCAATCTTAC
AAGTGGTTTC TTAATGAAGG TATTCGTGAA ATGTTTGACG ACATTATGCC GATTTCAGAC
TTTTCAGGAA AACTTTCTTT AGAGTTTGTT GACTACAAAC TTCTGAAGCC AAAATACACT
CTTGAAGAAG CACGTGATCA CGATGCAAAT TACTCTGCTC CTCTTCATGT AACTTTAAAG
TTAACCAACC ATGAAACTGG AGAAATTAAG ACTCAAGATG TCTTCTTCGG AGAATTTCCA
TTAATGACTG ATTCAGGTAC TTTCGTTATT AATGGTGCTG AGAGAATTAT TGTTTCTCAG
CTTGTTAGAT CTCCTGGTGT TTACTACCAT TCAGATTTTG ATAAAAATGG TCGCCAAATT
TTCGGTGCTA CAGTTATTCC TAACCGTGGT GCATGGCTTG AATATGAAAC TGATGCTAAG
GATTTAGCTT ATGTTCGTAT TGACCGTACT CGTAAGCTTC CATTAACAGT TCTAATTCGT
GCTTTAGGAT TTGGATCTGA TAGTGAAGTT GCTGATATGT TTGGTGAAAG TGACTCACTT
CGTTTCACTT TAGAAAAAGA TATCCACAAA AATCCTGCTG ACTCTCGTGT TGCCGAAGCC
TTAAAGGATA TCTACGAAAG ATTACGTCCA GGTGAACCTA AGACAACTGA TTCATCTCGT
TCGCTTTTGT ATGCTAGATT TTTTGATCCA AGAAGATACG ATTTAGCTCC TGTTGGTCGC
TACAAGATCA ATAAGAAACT TTCTTTAAAG AATCGGTTAT TAAGACAAAC TTTGGCTGAA
ACTTTAGCTG ACCCTGATAC TGGTGAAATC ATTGCTAAAA AGGGTGACGT TGTTACTCAT
GAAATTCTTG ATAAATTGTC ACCTTACTTA GATCGTGACG ACTTTAAGAT GGTAACTTAT
GAACCTTCAA AGGAAGGTGT CTTACCTGAC CCAGTAACAG TTCAAGAAAT TAAAGTATAT
TCTAAGGTTG ATCCTGAACG TGTAATTAAG TTAATGTCTA ACGGTCATAT TGCTGATGAC
GTTAAGCACT TAACTCCAGC TGATGTTTTG GCATCAATTA ACTACTTCTT TAACCTTCAA
GATAACATCG GAACTACTGA TGATATCGAC CACTTAGGTA ACCGTCGTAT TCGTCGTGTA
GGTGAATTAC TTCAAAACCA ATTTAGAATT GGTTTAGCAA GAATGGAACG TGTTGTGCGT
GAAAGAATGT CAATTCAAGA TATTTCTACA GTTACACCAC AACAATTAAT TAACATTCGT
CCTGTTGTTG CTTCAGTTAA GGAATTCTTT GGTTCATCAC AATTGTCACA GTTCATGGAC
CAAAACAACC CACTTGGTGA GTTAACTCAC AAACGTCGTA TGTCTGCCTT AGGACCTGGT
GGTTTGTCTC GTGACCGTGC TGGGTACGAA GTTCGTGACG TGCACTATAC TCACTATGGT
CGTTTATGTC CTATTGAAAC TCCTGAAGGA CCTAACATTG GTTTGATTAA CTCTTTAGCA
ACTTACGCTA TTGTTAATAA GTATGGCTTT ATTGAAACAC CATACCGTCG TGTTTCTTGG
GATACTCACA AGGTTACTGA CAAGATTGAT TACTTAACTG CTGATGTTGA AGATAATTAC
ATTATTGCTG GTGCCAACGC TCCATTAAAT GAAGACGGTT CTTTCAAGGA TAAGATCGTT
TTAGCTCGTC ATAAGGAAGA TAACCTTGAA GTTACTCCTG ATAAGATTGA CTATATGGAC
GTTATTCCTA AGCAAGTAGT TTCAGTAACT TCTGCATGTA TTCCTTTCCT TGAAAACGAT
GACTCTAACC GTGCCTTGAT GGGTGCTAAC CACCAACGTC AGGCTGTTCC ATTGATTAAC
CCACATGCTC CAATTGTTGG TACTGGTATG GAATACCGTG CTGCTCATGA CTCTGGAGAT
GCATTAGTTG CTAAAGCACC TGGTGTAGTT GAATACGTTG ATGCAAACGA AATTAGAATT
AGAAGAGACG ACGATACTTT AGATAAGTAT GTTCTTGAAA AATTCCGTCG ATCAAATGCA
ACTAAGAACT ACAACCAAAC ACCAGCTGTT AAGCAAGGCG AAAGAGTAGT AGCTGACGAA
GTTATTGCCG ATGGTCCAGC AATGGAAAAC GGTGAATTAG CTCTAGGTCA AAACCCAATT
ATTGCTTTCT TGACTTGGAA CATGTACAAC TATGAAGATG CCGTTATGAT TTCTGAACGT
ATGGTTAAAG ATGATGTCTA CACATCTATC CATATTGAAG ACTATGAATC AGAAGCTCGT
GATACTAAGC TTGGACCTGA AGAAATTACA CGTGAAATTC CAAACGTTGG TGAAGATGCG
CTTAAAGACC TCGATGAAGA AGGTATTGTA CGTATTGGTG CCGAAGTTCA AGACGGTGAT
ATCTTAGTTG GTAAAGTTAC TCCAAAGGGT GTGACTGAAT TATCAGCTGA AGAACGTTTG
CTTCACGCTA TCTTTGGTGA AAAGGCTCGT GAAGTTCGTG ACACTTCCTT ACGTGTACCA
CATGGTGGTG GCGGTATTGT TCAAAACGTA CAAGTCTTCA CGCGTGAAGC AGGAGACGAA
TTGCCACCTG GTGTAAACAA GATGGTTCGT GTCTACATCG TTCAAAAGCG TAAAATTCAA
GTTGGTGACA AGATGTCTGG TCGTCACGGA AACAAGGGTA CTATTGCCTT AGTTTGTCCT
GAAGAAGATA TGCCATACTT GCCAGATGGT CGTCCAGTAG ACATTTGTTT GAATCCAATG
GGTGTGCCTT CACGTATGAA CATTGGACAG GTTCTTGAAT TACATTTAGG TATTGCAGCT
AAGCAATTAG GTATTCATGT TGCCACTCCA GTATTTGATG GTGCTTCTGA AGATGATATG
TGGAACATGG TTCGTGAAGC TGGTATTGGT AAAGACGGTA AGACTGTTCT TTACGATGGA
CGTACTGGTG AACCATTCCA TAACCGTGTT TCAGTAGGTA TTATGTACTA CTTGAAGTTG
ACTCACATGG TTGATGATAA GATCCACGCA CGTTCAATTG GGCCTTACTC ACTTGTTACT
CAACAACCAC TTGGTGGTAA AGCACAATTT GGTGGTCAGC GTTTCGGTGA AATGGAAGTT
TGGGCTCTTG AAGCTTACGG TGCTGCATAC ACATTGCAAG AAATCTTGAC TTACAAGTCA
GATGATGTTG TTGGTCGTGT TAAGGCATAT GAAGCTATTG TCAAGGGTGA AAGAATTCCA
AAACCAGGTG TTCCAGAATC ATTTAGAGTT CTTGTTAAGG AACTTCAATC CTTAGGTTTG
GATATTAAAG TCTTAGATAT GGATCACAAG GAAATTGAAT TACGTGATAT GGACGATGAT
TCTAATGATC ACTTCAACAT TGACACTTTA TCTAAGCTTG CTGAACAACA AGAAAAGAAG
AAGTTGGCCG AAGAAGCTGC AAAGAAAGAT GACAAGTCAG CTGAACCTGT AGATCAGAGT
GATTCTTCAA CTTCATCTGA TGATAAGGTT TCTAAGTAA
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| Protein sequence | MFSLLGHAVN YGSHRTRRSF SRIKEVLKLP NLTDVQTQSY KWFLNEGIRE MFDDIMPISD
FSGKLSLEFV DYKLLKPKYT LEEARDHDAN YSAPLHVTLK LTNHETGEIK TQDVFFGEFP
LMTDSGTFVI NGAERIIVSQ LVRSPGVYYH SDFDKNGRQI FGATVIPNRG AWLEYETDAK
DLAYVRIDRT RKLPLTVLIR ALGFGSDSEV ADMFGESDSL RFTLEKDIHK NPADSRVAEA
LKDIYERLRP GEPKTTDSSR SLLYARFFDP RRYDLAPVGR YKINKKLSLK NRLLRQTLAE
TLADPDTGEI IAKKGDVVTH EILDKLSPYL DRDDFKMVTY EPSKEGVLPD PVTVQEIKVY
SKVDPERVIK LMSNGHIADD VKHLTPADVL ASINYFFNLQ DNIGTTDDID HLGNRRIRRV
GELLQNQFRI GLARMERVVR ERMSIQDIST VTPQQLINIR PVVASVKEFF GSSQLSQFMD
QNNPLGELTH KRRMSALGPG GLSRDRAGYE VRDVHYTHYG RLCPIETPEG PNIGLINSLA
TYAIVNKYGF IETPYRRVSW DTHKVTDKID YLTADVEDNY IIAGANAPLN EDGSFKDKIV
LARHKEDNLE VTPDKIDYMD VIPKQVVSVT SACIPFLEND DSNRALMGAN HQRQAVPLIN
PHAPIVGTGM EYRAAHDSGD ALVAKAPGVV EYVDANEIRI RRDDDTLDKY VLEKFRRSNA
TKNYNQTPAV KQGERVVADE VIADGPAMEN GELALGQNPI IAFLTWNMYN YEDAVMISER
MVKDDVYTSI HIEDYESEAR DTKLGPEEIT REIPNVGEDA LKDLDEEGIV RIGAEVQDGD
ILVGKVTPKG VTELSAEERL LHAIFGEKAR EVRDTSLRVP HGGGGIVQNV QVFTREAGDE
LPPGVNKMVR VYIVQKRKIQ VGDKMSGRHG NKGTIALVCP EEDMPYLPDG RPVDICLNPM
GVPSRMNIGQ VLELHLGIAA KQLGIHVATP VFDGASEDDM WNMVREAGIG KDGKTVLYDG
RTGEPFHNRV SVGIMYYLKL THMVDDKIHA RSIGPYSLVT QQPLGGKAQF GGQRFGEMEV
WALEAYGAAY TLQEILTYKS DDVVGRVKAY EAIVKGERIP KPGVPESFRV LVKELQSLGL
DIKVLDMDHK EIELRDMDDD SNDHFNIDTL SKLAEQQEKK KLAEEAAKKD DKSAEPVDQS
DSSTSSDDKV SK
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