| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_0271 |
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| Symbol | |
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| ID | 4438779 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Lactobacillus gasseri ATCC 33323 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008530 |
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| Strand | + |
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| Start bp | 303777 |
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| End bp | 307274 |
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| Gene Length | 3498 bp |
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| Protein Length | 1165 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 639672130 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_814117 |
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| Protein GI | 116628945 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 66 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATATTA CAGAATTACT TAATAAAGAC AAAGATTTAA ATAATTTTAT TAATAAAGCT
CTAAAAGAAA AACGTTCACT TTTAACTGGA GTAAATTCTG GAGCTTTTAG TGCTGTCTTG
ATGCAAATGT TAAGCACTTG GCAGCGTCCC TTAATTTTAG TTGAAGATAG TGAAGATAAG
GCACAACTGC TCTTAGATGA GCTAGGAAAT TTATTACCTG ATGAGATGGT ATTTAGTTTT
CCGGTTGATG CCACAATTGC AACACAAACT GCTGTCGCTT CTCCAGATGA ACTAAGTCAA
AGACTGCAAA CTTTGAAATT CTTGACTGAA AAAAGAGCCG GAATTGTAGT AATAACTCCG
CAAGCATTGC AATATAAGCT AAGTGATCCG CGAGATTTTA TTAAAGCAAA GCAAGTGTTT
AAACCTGAAG CAGAATTTGA CTTAGATGAA TTGACTGCAT GGTTCACACA AGCTGGATAT
CGTAGAGAAA ACATTGTTGC ACGTCCAGGC GAATTTGCTC GTCGTGGTGA CATTCTTGAT
GTTTATCCTT TAGACCAAGA AAATCCCGTT AGAATTGAAT TTTTTGGTGA TGAAGTTGAT
ACTGTAAAAG AATTTGATGC AGCAACACAA CGCAGCTTGG AAGAAAAAGA TATTGTTTCA
ATCGGGCCGG CTTTAGACAG AGTATTTTCT AGCCGTAATC TGCATGAGGC AATTGAAAAA
ATAAAGCAAG ATATGAATGA ATCAATTGCC AACGAAGAAA ATGTTAAAAA TCATTTTGTT
AAAGCAATTG ACTTGCTTGA AGCGGACGGC CTTCCCGAAA ATTATGCTTT TTTAATTGAT
TACCTACTAC CCAAGTCGTT TAATTTGGTG GATTATCTTG ATAAAAATGG CTTACTTTTA
TTTGATGATT GGCAAGCAAT CAAAAAGAAT GTTGCTGATG TAGATGCTCA AAACGAAGCT
TTTATTTCCG AAGAAATAAA AGCGGGCGCA ATGTTAAATA GCCAAAAATT ACGGCATAAT
TTTGAGCAAG TCGTGCAAAA AGTGAAACAG GCGCAAGTGC TATTTTCACT GTTTCAAAAA
GGAATGGGTC GCCTAAAATT TGATCAAATA CTTAATTTTA CTACGCGAGA AGTGCAGCAA
TTCTTTAGTC AGATGCCACT AATTAAAAGT GAATTAACAC GTTTTGCAAA TGAAGGAAAT
ACGGTTGTTT TACAGGCTGA TTCGGCAACT CGTGCTAAGC AAATTGCTCA AAATTTAGTA
GATTATGGTG TTGATCTTCC AGTTGTTAAA CCTGATCAAA TTTTGGCAAA AAAAGCTCAA
ATAACTGTTG GTGACTTTGC ACATGGTTTT GCTCTTCCTA GTTTGAATTT GGTGTATTTA
ACTGAACGTG AACTGTTTAA TCAAAGACCA CACCATCGTA AACGTATTAA AACACTTGAA
AATGCTCAGC GTTTACGGAA CTATAACGAA TTAAAGCCAG GTGACTATGT CGTTCATGTT
AATCATGGTA TTGGCCGTTT TGAAGGAATT AAGACATTAG ATGTAGATGG AAAAAAACGT
GATTACATAA CAATTACCTA TCAACATCAT GATCAACTAT TTGTTCCAGC TGATCAATTA
GGATTAGTTC AAAAATACGT GGCATCAGAA GGTAAAGTTC CGCATATTAA TAAATTAGGA
AGTGCAGAAT GGGCCAAGAC TAAAAAGCGA GTTCAATCAA AGGTTGAAGA TATTGCAGAT
GATTTAATCG AATTATATGC TAAACGTGAA TCTGAAAAGG GGTTTGCTTT TAGTCCAGAT
GATGATTTAC AAAAAGAGTT TGAAGATGCT TTTCCTTATC CAGAAACGCC TGATCAGCTT
CGTTCAATTA GAGAAATCAA GGCGGATATG GAAAGTCCTA AGCCAATGGA TCGCCTCTTA
GTTGGTGATG TAGGTTTTGG TAAGACTGAA GTTGCCTTAA GAGCTGCATT TAAGGCTATT
CGTGATGGAA AGCAAGTTGC ATTTTTAGCA CCAACTACTA TTTTGGCACA GCAACATTTT
GAAACAATGC AGGATCGTTT TAAAAATTTC CCAGTCAATT GTGCGCTTCT ATCACGTTTT
CAAACTCCTG CTGAGGTAAA GGCGATAATT GAAGGGGTAA AAAATGGCAA AATTGATATG
GTTGTTGGTA CGCACCGTTT ACTATCAAAA GATGTAAAAT TTAAAGACCT TGGTTTATTA
ATAGTTGATG AAGAGCAGCG ATTTGGTGTT AAGCACAAAG AAAGACTAAA AGAATTAAAA
GCTAATATTG ATGTTTTGAC TCTGACAGCT ACGCCAATTC CACGTACTTT ACATATGTCA
ATGGTTGGAG TAAGAGATCT TTCTGTAATG GAAACTCCGC CAACCAATCG ATACCCAATT
CAAACTTATG TCATGGAAGA AATGCCTAGT GTTGTACGTG AAGCAGTTCT GAGAGAAATG
AAGCGAAATG GGCAGGTATT TTTCTTGCAT AATCGGATTG ATGATATTGA TAAAGTAGTT
AGCCGATTAG AAGAACTAAT ACCAGAAGCT AAAATTGAGT ATATTCATGG CCGCATGAGC
GAAAATCAAA TGGAAGATAT TATGTATCGT TTTTCAAGAA ATGAATTTGA TATCTTAGTA
ACAACAACAA TTATCGAAAC TGGAGTTGAT ATGCCCAATG TCAACACAAT GATTGTTGAA
AATGCGGATC ACTATGGTTT AAGTCAGCTT TATCAATTAC GTGGTCGAAT TGGACGAAGT
GCTCGTTTGG CTTATGCTTA TTTTTTGTAT CAGCCTAATA AGGTCTTAAC CGAAATTGGT
GAAAAGAGAT TAAGTGCTAT TCGTGACTTT ACTGAATTGG GCTCAGGCTT TAAGATTGCC
ATGCGAGACT TGTCAATTAG AGGAGCCGGC AACATGCTAG GAAAACAGCA GCATGGTTTT
ATTGATAGCG TTGGCTATGA TTTATATGCT CAAATGTTAG ATGATGCAAT TAAGAAACGT
AAAGGCAAGA AAGTTGCTGT TAAATCTAAT GCCGAAGTGC AATTTAATTT GGAAGCATAT
ATTCCTGATG ATTATATTGC TGATCAGGAA CAGAAGATTG AATTTTATAA AAAAATTAAA
GGGATTAATG ACCAAAAGGA AGCAGAAAAT ATCGCTGATG AATTAATTGA TCGTTTTGGA
GATTATCCAT TAGCGGTGGA AAATCTGTTA AATGTATCAA AAGTCAAAGC AGATGCTGAT
TTAGCCCAAG TAGTAGCAAT TAATCAGAAG TCAAATGATA AATTACAGAT TATTTTCAAT
AATCGCGCTA GTGAAGAATT AGAAGGGCCA AATATTTTTA AGGCATTAGA ACATGTGTCA
TTAAGAGCCA GGATTAATAT GGATCCACAA AAGAGAATGA ATGTCATGCT TGAACTTGAA
AAAAAGATGA GCACTAGACA ATTATTTAAT GAGCTGCACA CATTCTTAAC AGCAGCAAGT
GATATTGTTC AAAGGTAG
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| Protein sequence | MNITELLNKD KDLNNFINKA LKEKRSLLTG VNSGAFSAVL MQMLSTWQRP LILVEDSEDK
AQLLLDELGN LLPDEMVFSF PVDATIATQT AVASPDELSQ RLQTLKFLTE KRAGIVVITP
QALQYKLSDP RDFIKAKQVF KPEAEFDLDE LTAWFTQAGY RRENIVARPG EFARRGDILD
VYPLDQENPV RIEFFGDEVD TVKEFDAATQ RSLEEKDIVS IGPALDRVFS SRNLHEAIEK
IKQDMNESIA NEENVKNHFV KAIDLLEADG LPENYAFLID YLLPKSFNLV DYLDKNGLLL
FDDWQAIKKN VADVDAQNEA FISEEIKAGA MLNSQKLRHN FEQVVQKVKQ AQVLFSLFQK
GMGRLKFDQI LNFTTREVQQ FFSQMPLIKS ELTRFANEGN TVVLQADSAT RAKQIAQNLV
DYGVDLPVVK PDQILAKKAQ ITVGDFAHGF ALPSLNLVYL TERELFNQRP HHRKRIKTLE
NAQRLRNYNE LKPGDYVVHV NHGIGRFEGI KTLDVDGKKR DYITITYQHH DQLFVPADQL
GLVQKYVASE GKVPHINKLG SAEWAKTKKR VQSKVEDIAD DLIELYAKRE SEKGFAFSPD
DDLQKEFEDA FPYPETPDQL RSIREIKADM ESPKPMDRLL VGDVGFGKTE VALRAAFKAI
RDGKQVAFLA PTTILAQQHF ETMQDRFKNF PVNCALLSRF QTPAEVKAII EGVKNGKIDM
VVGTHRLLSK DVKFKDLGLL IVDEEQRFGV KHKERLKELK ANIDVLTLTA TPIPRTLHMS
MVGVRDLSVM ETPPTNRYPI QTYVMEEMPS VVREAVLREM KRNGQVFFLH NRIDDIDKVV
SRLEELIPEA KIEYIHGRMS ENQMEDIMYR FSRNEFDILV TTTIIETGVD MPNVNTMIVE
NADHYGLSQL YQLRGRIGRS ARLAYAYFLY QPNKVLTEIG EKRLSAIRDF TELGSGFKIA
MRDLSIRGAG NMLGKQQHGF IDSVGYDLYA QMLDDAIKKR KGKKVAVKSN AEVQFNLEAY
IPDDYIADQE QKIEFYKKIK GINDQKEAEN IADELIDRFG DYPLAVENLL NVSKVKADAD
LAQVVAINQK SNDKLQIIFN NRASEELEGP NIFKALEHVS LRARINMDPQ KRMNVMLELE
KKMSTRQLFN ELHTFLTAAS DIVQR
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