| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_0187 |
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| Symbol | celD |
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| ID | 4438833 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Lactobacillus gasseri ATCC 33323 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008530 |
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| Strand | + |
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| Start bp | 221126 |
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| End bp | 222478 |
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| Gene Length | 1353 bp |
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| Protein Length | 450 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 639672048 |
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| Product | cellobiose phosphotransferase system IIC component |
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| Protein accession | YP_814036 |
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| Protein GI | 116628864 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1455] Phosphotransferase system cellobiose-specific component IIC |
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| TIGRFAM ID | [TIGR00359] phosphotransferase system, cellobiose specific, IIC component
[TIGR00410] PTS system, lactose/cellobiose family IIC component |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.00139764 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 0.0305925 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCTGACA CTGCGCAACC ATCATTTAAA GATAAAATGA TGAAGATACT AGGCAAGTTC
TCAGGTTCAC GTTTTGTACG TGCAATTATG GGTGCTGGTT ATTCGATTAT TGCCTTTTCT
ATCATTGGAT CAATGTTTTT GGTCTTAACA GTTTTGACTC AAGTTATTAC TGCTAAAGGA
TTTGTAGATT TTTACAATAA TACATTTGGA CGTTTTAACA ATATTTATAC TGTTATTTAC
AACGCCACCA TGGGTATTAT CGCAATTTAC TTTGCTGGAT CATTTGCTTA TAACTATGCA
GATATTTACC GTAAAGAAGA GAATTTATTG CTTGATCCAT TGAACGCAGT TTTCTTAACT
TTAATGGGCT TATTCATTAC CGTTCCACAA TTAGTATGGA AGGGTGGTAA CACTGTCTTT
GTTAACATTT TAAAGAAAGA TAATGTTATT GCCGGTGGTT ATGGCGTTTC TGGTTCTGGG
TTAACTAGAA TTGGTGCTAC AGGTATCTTT ACTGGTTTAA TCGTTGCCTG GTTAACTGTT
CAAATTTATC GTTTCTGTAT TAAACACAAT TGGCGAATTA AAATGCCAGC ATCTGTTCCA
TCAGGTGTTG CTAACTCATT TACTGCTTTG ATTCCTGGTT TTGTGATTGC GATTGTCATT
GCTTTAATTG ACGTTATCTT AATTGTTCTT GGTACAGATA TTTTCCAATT ATTGTTTATT
CCATTCTCAT TTGTTTCAAA CATTGCTAAT ACCTGGTGGG GAGTTTTGAT TATCTTCTTC
CTGATTCACT TCTTATGGTG GTTTGGTATT CACGGTGCGA CTATTATTTC AAGTTTCTAC
CAAGCAATTG TTTTATCAAA CATGGCTGCT AATGCTTCTG GTGCTCACTA TGTATTTGCA
GGTGAATTCG CAAACGCATT CGTAATTATG GGGGGATCAG GAGCTACCTT GGGTATGGCA
CTCTGGATGG CTTTTGCTTC TAGATCTAAA CAATTACGAG AACTTGGTAA ACTTGAAGCT
GTTCCTGCTG TATTTAACAT TAACGAACCT TTACTATTTG GTTTGCCAAT TGTTTATAAC
GTACGTTTAT TTGTTCCATT CTTATTAGCA CCTATGACTT GTTCAATGGT TGCTTATGCA
GCTATTGCAA CTCACTTAGT ACCTAAGATT ATTGTTCAAC AACCATGGCC AATTCCTGTA
GGTATTGGTG GTATGATGGC CACTGCTAGT TGGCAAGGTG CTGTTTTAGC TTTAGTCAAT
GCTATAGTTG CATTCTTAAT TTGGTATCCA TTCATTAAGC ATTACGACAA TGAATTGCTT
AAGAAAGAGC AAGCTGGTGC TGAGAAAGCT TAA
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| Protein sequence | MSDTAQPSFK DKMMKILGKF SGSRFVRAIM GAGYSIIAFS IIGSMFLVLT VLTQVITAKG
FVDFYNNTFG RFNNIYTVIY NATMGIIAIY FAGSFAYNYA DIYRKEENLL LDPLNAVFLT
LMGLFITVPQ LVWKGGNTVF VNILKKDNVI AGGYGVSGSG LTRIGATGIF TGLIVAWLTV
QIYRFCIKHN WRIKMPASVP SGVANSFTAL IPGFVIAIVI ALIDVILIVL GTDIFQLLFI
PFSFVSNIAN TWWGVLIIFF LIHFLWWFGI HGATIISSFY QAIVLSNMAA NASGAHYVFA
GEFANAFVIM GGSGATLGMA LWMAFASRSK QLRELGKLEA VPAVFNINEP LLFGLPIVYN
VRLFVPFLLA PMTCSMVAYA AIATHLVPKI IVQQPWPIPV GIGGMMATAS WQGAVLALVN
AIVAFLIWYP FIKHYDNELL KKEQAGAEKA
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