| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_0019 |
|---|
| Symbol | |
|---|
| ID | 4438904 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus gasseri ATCC 33323 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008530 |
|---|
| Strand | - |
|---|
| Start bp | 20749 |
|---|
| End bp | 21375 |
|---|
| Gene Length | 627 bp |
|---|
| Protein Length | 208 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 639671881 |
|---|
| Product | phosphatase |
|---|
| Protein accession | YP_813873 |
|---|
| Protein GI | 116628701 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 67 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 58 |
|---|
| Fosmid unclonability p-value | 0.379676 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTAAGA CAATTTTATT CGATGTAGAT GGCACTATTG TTGATATACA AAAGGTTGTT
CTTTCCACAT TCAAAGAGGT TATTAAAGAA TATTTAAATA CAAATGTTAA TATTAACGAT
TTAGCCTTTG CATTGGGAAT TCCTGGAAGA GATGCCATTA AGCATTTTAC TAAGAATAAA
GTATTGATCA ATAAAATGGC TAAAAGTTGG TCTGAAAAAG CTAGTAACCG AGTTGATGAA
GATACATTAT TTAATAATAT CCCCGAAACT ATCAAATCTC TATCTCAAAA GGGAATTACT
TTAGGAATTG TTACTTCAAA AACTAAACAA GAATATATTA ATGAAGTCGG TCACTTTGGA
CTAGATGATT ATTTCGATGT AATTGTTACT GCAAGTGATA CTAAGAATCA TAAACCTAAT
CCTGAGCCAT TAAATTTCGC AATAAGTAAA CTTGGTGTAG ATCGTACTGA AACGCTTTAT
GTAGGTGATA CCAAATATGA TATGTTAACT GCTAACGCCG CTAAAGTGAA ATTTGCTTTA
GCCAATTGGG GAGCACATGA AGAACTTCCT GAAGCAGATT ATCAATTAAA TAACCCAATT
AATTTAGAAG AAATAGTTAA AAGATAA
|
|---|
| Protein sequence | MIKTILFDVD GTIVDIQKVV LSTFKEVIKE YLNTNVNIND LAFALGIPGR DAIKHFTKNK
VLINKMAKSW SEKASNRVDE DTLFNNIPET IKSLSQKGIT LGIVTSKTKQ EYINEVGHFG
LDDYFDVIVT ASDTKNHKPN PEPLNFAISK LGVDRTETLY VGDTKYDMLT ANAAKVKFAL
ANWGAHEELP EADYQLNNPI NLEEIVKR
|
|---|
| |