Gene LGAS_0006 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLGAS_0006 
Symbol 
ID4438891 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLactobacillus gasseri ATCC 33323 
KingdomBacteria 
Replicon accessionNC_008530 
Strand
Start bp6345 
End bp8834 
Gene Length2490 bp 
Protein Length829 aa 
Translation table11 
GC content39% 
IMG OID639671868 
ProductDNA gyrase, A subunit 
Protein accessionYP_813861 
Protein GI116628689 
COG category[L] Replication, recombination and repair 
COG ID[COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 
TIGRFAM ID[TIGR01063] DNA gyrase, A subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000708877 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value8.0391e-18 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCTAACG AAAATCAACC TCAAGATCAC AGAATACGTA ATGTTGATTT GACCCATACG 
ATGCGTAGCT CTTTCTTAGA TTATGCTATG TCAGTTATTG TGGCTCGTGC CTTACCTGAC
GTTCGGGATG GTCTAAAGCC TGTACAACGT CGTATTCTTT ACGGAATGCA TGAACTAGGA
GTTACACCAG ATAAACAGTA CAAAAAGAGT GCCAGAATTG TTGGAGAAGT TATGGGTAAG
TTTCACCCAC ATGGTGACTC CTCAATTTAC TTAGCTATGG CTCACATGGC TCAAGACTTT
TCATATCGTT ATATGCTAGT TGATGGACAC GGAAACTTTG GTTCTGTCGA TGGGGATGAA
CCAGCCGCAA TGCGTTATAC CGAGGCAAAA ATGAGCAAAA TTGCGGTTGA AATGCTTCGC
GATATCAATA AAGAAACGAT TGACTGGCAA CGTAACTATG ATGATACGGA AAATGAGCCG
GTAGTTTTAC CTGCCAGAAT TCCTAACTTA CTTGTAAATG GTGCTAGCGG TATTGCTGTT
GGTATGACGA CTAATATTCC ACCACATAAT TTGGCGGAAG TAATTAGTGG GATCCATATG
TTGATGGATA ATCCAGATGT TACTACCAAA GACTTAATGA AGGTCATTCC TGGTCCTGAT
TTTCCAACTG GCGGTATTGT AATGGGACGT GGCGGCATTT ACCGCGCATA TGAAACAGGT
AAAGGTAATA TCGTTGTTCG TGCAAAGACT AATATCGAAA CAGAAAAGAA TGGCCGTGAA
CGAATCGTAG TTAGTGAATT ACCATACTTA GTAAATAAGG CTGAATTAGT TAAGAAAATT
GCAGATTTAG CTCGTGAAAA AATAATTGAT GGTATTACTG GAGTTCGTGA TGAATCAGAC
CAGACTGGTA TGAGAATTAC GATTGATATT CGCCGGGATG CAAGTGCTAG CGTGGTTTTG
AATAACTTAT TTAAAGAAAC CCAAATGCAG GCAAACTTCG GTATGAATAT GGTTGCGATT
GTTAACGGCG CTCCACACTT CTTAACTTTG AAGCAAATGC TTGAATACTA TCTTCACCAT
CAAGAAGATG TTATTACTCG CAGAACTAAG TTTGAATTAA AGAAGGCTGA AGCTAGAGCA
CATATTTTAG CTGGATTGAG AATTGCGCTA GATCATATTG ATGAAATCAT TAAGATTATT
CGTGGATCCC AAAATAGCGA TATTGCTAAA GCACAATTGA TTCAAAACTT TGGCTTAGAT
GATCGTCAAT CTCAAGCTAT TTTGGATATG CGTCTGGTTC GTTTAACAGG TTTAGAGCGA
GACAAGATTG AAGCTGAATA TCAAGATTTA CAAGCAAAAA TTGCAGATTA CAAAGATATT
CTCGCTAAGC CAGAACGAAT CGATGAAATT ATCTACAATG AATTGCTTGA TATTCAAAAG
CGTTTTGGTG ATGATAGACG AACTAAGATT GCGGAAGGCG AAGCAGTTTC AATTGAAGAT
GAAGATTTAA TTGAACAAAA AGATGTATTG CTAACTCTCA CTCACAATGG CTACATTAAG
CGGATGCCAG CTGATGAATT TAAAGTACAA AACCGTGGTG GACGCGGAAT AAAGGGAATG
GGAGTACAAG ATGATGACTT TATCAATCAC TTGATCTTCT CAAGTACCCA TGACTTTTTG
TTATTCTTTA CTAACTTAGG TAAGGTTTAC TCAAAGAAGG CTTATGAAAT TCCAGAATTT
GGTAGAAACG CTAAAGGATT GCCAATCGTT AACTTGCTAG AGCTCGATAA GGGTGAAAAG
ATTCAAGCGG TAATTAATGT TCCGGAAGGC GCAGATGATA ACTATCTCTT CTTTGTTACT
AAGATGGGAA CAGTCAAGAG AACAAAAGTT AGTGAATTTC AAAATATCCG TCGTAGTGGT
TTGATTGCCT TGACTCTTCG CGATGGGGAT GAGTTAAATA ACGTTTTAAC TACTGATGGT
AAGCAAAATA TCCTTATTGG AACTCATTTA GGCTATGCGG TTACCTTTAA TGAAAATGAT
GTTCGCTCAA TGGGTAGAAC TGCAGCAGGT GTACGCGGAA TTAATCTAAG AGACAACGAT
TACGTAGTCG GATCTGATAT TTTAGAACCT GATTCAGAAG TATTAGTAAT TTCTGAAAAA
GGATACGGAA AGCGGACCGC AGCTTCTGAA TATCCAGTTA AGGGACGTGG TGGTAAAGGA
ATTAAAACTG CCAACATTAC TGAAAAGAAT GGTCCTTTAG CAGGTGTAAC AGTAGTTAAT
GGTGATGAAG ATATCATGTT AATCACTAGT GCTGGCGTTA TGATTCGTTT TGACGTTGAT
GACGTTTCTC AAACTGGTCG AGCTACTTTA GGTGTACGTT TAATCAAGGT TGATGATGGT
GCTCAAGTTG CAAGTATTAC TGCAGTACCG AAGGCTAATG ATGAAGACGA AGAAGCAACT
GATGAAAAAG AACCAGTAGA AGAAAATTAA
 
Protein sequence
MANENQPQDH RIRNVDLTHT MRSSFLDYAM SVIVARALPD VRDGLKPVQR RILYGMHELG 
VTPDKQYKKS ARIVGEVMGK FHPHGDSSIY LAMAHMAQDF SYRYMLVDGH GNFGSVDGDE
PAAMRYTEAK MSKIAVEMLR DINKETIDWQ RNYDDTENEP VVLPARIPNL LVNGASGIAV
GMTTNIPPHN LAEVISGIHM LMDNPDVTTK DLMKVIPGPD FPTGGIVMGR GGIYRAYETG
KGNIVVRAKT NIETEKNGRE RIVVSELPYL VNKAELVKKI ADLAREKIID GITGVRDESD
QTGMRITIDI RRDASASVVL NNLFKETQMQ ANFGMNMVAI VNGAPHFLTL KQMLEYYLHH
QEDVITRRTK FELKKAEARA HILAGLRIAL DHIDEIIKII RGSQNSDIAK AQLIQNFGLD
DRQSQAILDM RLVRLTGLER DKIEAEYQDL QAKIADYKDI LAKPERIDEI IYNELLDIQK
RFGDDRRTKI AEGEAVSIED EDLIEQKDVL LTLTHNGYIK RMPADEFKVQ NRGGRGIKGM
GVQDDDFINH LIFSSTHDFL LFFTNLGKVY SKKAYEIPEF GRNAKGLPIV NLLELDKGEK
IQAVINVPEG ADDNYLFFVT KMGTVKRTKV SEFQNIRRSG LIALTLRDGD ELNNVLTTDG
KQNILIGTHL GYAVTFNEND VRSMGRTAAG VRGINLRDND YVVGSDILEP DSEVLVISEK
GYGKRTAASE YPVKGRGGKG IKTANITEKN GPLAGVTVVN GDEDIMLITS AGVMIRFDVD
DVSQTGRATL GVRLIKVDDG AQVASITAVP KANDEDEEAT DEKEPVEEN