| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | OEOE_1835 |
|---|
| Symbol | |
|---|
| ID | 4416494 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Oenococcus oeni PSU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008528 |
|---|
| Strand | + |
|---|
| Start bp | 1757553 |
|---|
| End bp | 1758560 |
|---|
| Gene Length | 1008 bp |
|---|
| Protein Length | 335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 639669986 |
|---|
| Product | geranylgeranyl pyrophosphate synthase |
|---|
| Protein accession | YP_811335 |
|---|
| Protein GI | 116491791 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAAT TTTTTGGGGA AACTTATTCT TACAAGCAGG ATATTGAAAA AGTCAAAGAA
ATTCTCGCAC AACAACATTT TAACGTAGAA CCATATCGAG AAAAGACTGA AGTCCTAATT
CAAAACAATG GAAAAATGAT CAGAGCTTTA ATTACGATTC TTTTTGGCAG ATACACTTTA
ACTGTTAATC AAAAGAATTA TGATCAAGAG ACAATTTTTT CAATCGACCA ATGCGCAGCA
GCAATCGAAT TGCTTCATTT GGCGACTTTG GTTCATGACG ATGTTATCGA TAACGCCGAG
AAAAGACGTG GTTTAACAAC TTTACAAAAT TTTTTCGGCA ATAAAAACAC GATCTATTTA
GGCGATATCC TATTTACCAA ATATTTTTAT CTTTTAACGT CTTTGGCTCC TTCAAAAGAA
TTTATCGCCT ATCATTCCTC AGCGATGGAA AAAGTGTTGA CAGGGGAATT AATTCAAGAT
GCGCTTAAAT TCCATAAACA GACGACTCTT GCAGAATATT ATCAAGCAAT TAAAGGAAAA
ACGGCCACTC TTTTCAGTTT ATCAGCTGTC TCAGGCGTTT GGCTTGGAAA AAAGAACAAG
CAATTCGACG AGGATAATTT AGAATTTAAA AACGCCTTTA ACTTTGGCTA TAACCTGGGG
ATGGCTTTTC AAATGCTCGA TGATTTAAAA GATCTGAATC CTTTAGTTAA AAATGGAAAA
CCGAAGTTTG AAGATTTGAA GGCTGGTATT TACACTTTTC CGATTATTTT GGCGCTTAAG
GACAAAAGTT TCCAAAAAAT CCTTAGTAAA GGCGAGTCTA ATCCTTTTAT TATCGAAAAC
TACTTCATTG AGAATCCGGA TTATTTAAAA AGATGTAAAG ATATTATTGA TCATTTCCTA
AACGAAGCAC AAAAGGCTTT GGAATTTCTG ATCGACAGCC CGGAGTCCGA TCAATTAAAT
TCATTGTTGA CAAACTTAAG ACTCAATATG GAAAACTACA ACATTTAA
|
|---|
| Protein sequence | MTEFFGETYS YKQDIEKVKE ILAQQHFNVE PYREKTEVLI QNNGKMIRAL ITILFGRYTL
TVNQKNYDQE TIFSIDQCAA AIELLHLATL VHDDVIDNAE KRRGLTTLQN FFGNKNTIYL
GDILFTKYFY LLTSLAPSKE FIAYHSSAME KVLTGELIQD ALKFHKQTTL AEYYQAIKGK
TATLFSLSAV SGVWLGKKNK QFDEDNLEFK NAFNFGYNLG MAFQMLDDLK DLNPLVKNGK
PKFEDLKAGI YTFPIILALK DKSFQKILSK GESNPFIIEN YFIENPDYLK RCKDIIDHFL
NEAQKALEFL IDSPESDQLN SLLTNLRLNM ENYNI
|
|---|
| |