Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | OEOE_1417 |
Symbol | rplJ |
ID | 4415877 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Oenococcus oeni PSU-1 |
Kingdom | Bacteria |
Replicon accession | NC_008528 |
Strand | - |
Start bp | 1330398 |
End bp | 1330991 |
Gene Length | 594 bp |
Protein Length | 197 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 639669591 |
Product | 50S ribosomal protein L10 |
Protein accession | YP_810943 |
Protein GI | 116491399 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0244] Ribosomal protein L10 |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000013127 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGCGAAA AAACAATTGC AGTCAAAGCT CAAAAAGTTG ACGAAGTTGC TGATATGTTT TCAAATTCCG TATCGGCGGT TGTTGCTGAC GTGCGTGGTT TGACTGTTGC CCAGGCTGAT GATTTGCGGG CCCAGCTTCG TGACGAAGGC GTTTCACTCA AGGTTATCAA AAACAAGATT TTAACTCGTG CAGCTGAAAA AGCTGGTTAC CAAGAGTTAA ATGATTTGTT CAAGGGACCT TCAGCAATTG CCTTTTCTAA AGAGGATGTG GTTGCCCCTG CTCGAATTTT AAAGAAATTC AGTGGTACTG CTGATGCTTT GGAATTAAAA GGTGGAGTCA TCGATCGCAA AGTTGCGGAT CTTGACACAA TTAATCGTTA TGCTGCATTG CCTTCCAAGG AGACTTTGCT CCAGCAATTA CTTGCCGAAT TCCAGTCACC GCTCCGCAGC TTTATGTACG CAGTTAAAGC TGTTGCCGAA AAGCGCGAAG CAGATGGTGA AACAGCTGAG ACTCCAGCAC AGGAAACAGC TAGTGACGAT TCAAAATCTA CAAAGGCTGA AGCATCCGAT GCTTCGACTA CTGAAAACAA ATAA
|
Protein sequence | MSEKTIAVKA QKVDEVADMF SNSVSAVVAD VRGLTVAQAD DLRAQLRDEG VSLKVIKNKI LTRAAEKAGY QELNDLFKGP SAIAFSKEDV VAPARILKKF SGTADALELK GGVIDRKVAD LDTINRYAAL PSKETLLQQL LAEFQSPLRS FMYAVKAVAE KREADGETAE TPAQETASDD SKSTKAEASD ASTTENK
|
| |