| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | OEOE_1099 |
|---|
| Symbol | |
|---|
| ID | 4416882 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Oenococcus oeni PSU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008528 |
|---|
| Strand | - |
|---|
| Start bp | 1030041 |
|---|
| End bp | 1031510 |
|---|
| Gene Length | 1470 bp |
|---|
| Protein Length | 489 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 639669291 |
|---|
| Product | Rad3-related DNA helicase |
|---|
| Protein accession | YP_810663 |
|---|
| Protein GI | 116491119 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2176] DNA polymerase III, alpha subunit (gram-positive type) |
|---|
| TIGRFAM ID | [TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.829267 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATGAAA ATTCAACTTT TTCAATTGTG GATTTAGAAA CAACTGCTCC ATTCAAAGAG
GGCGGCCATA TTATTCAGAT TGGAATTAGT TTTGTTAAAA ATTGGAAAAT AATTAATAAT
TTTCAGACGA TGGTTAATCC TGGCGTTAAA ATACCTGAAC AAATTGTAGA TTTAACCGGG
ATAAAAAACG AAGATGTCGA GAATGCACCA TATTTTGAAG ATTTGGCTCG AATGATTCAT
GACCAACTGT CAGGAACTGT TTTTGTTGCG CACAACGTTC GTTACGACTT TCCGTATTTA
AACGGGGAAT TCGCTCGGAT AAAAATGCGC CGCTTACGTT TGGAATACGT TGATACGGTT
CAATTGGCCC AAATTGTTTT TCCAACAATG AACAGTTATA AATTAGATGA GCTTGTTTCA
AAACTCGGTA TTAATCTACC AAGGCATCAT CGAGCGGATC AGGATGCTTC GGCAACTGCA
CAGCTTTTTT TGAAAATTCA TGAACATTTG CAAGAATTTC CGCAGAATAC TTTAAATAAT
TTGATTAATC ATTCGAAAAG TTTGCTTGGA AATACGGAAA CAATTTTTCA ATTGTCGAAA
GGAAAAAGAA CTTTTCCCGG TGATCGATAT GGTCCTTTCG ACATCGCAAG ACTGAAAAAA
ATAGATAAGG GGCAGCTTAT TAAATGGATA GAAGCAAAGA AACAGTCTTC GCTTTCCAAA
CCGCTCCCGG CAACTGTTTT AAGACCACGT CAAGAATCTT TTGCCAATAT TCTTCAATCG
AAAATTACTG GCAAAAATAA TAAGATTTTT TCTGTTTTTT CCCGACCGCG TTTTGGAAAA
ACAAATGCTT ATTTGGATTT GGCTGTGAAA ATTGCCGCCA AAGGATATAA AATTTTAATC
ATTGAGGAAA ATTATTTAAG AAGACGTTCG ACTTTTCAAA AATCTCAATC CCTATTTCCC
GAAAATAAGG ATTTGTTTCA AATCCCGATT ACAAGAAAAG ATTTCGTTAG TTTGGATAAA
TTGGCTGATG CTTTTTTGAC CGAAGACAAT CCCAGCCGTC AATTGGCGAA GTTAAGAGTT
ATTAGTTGGC TACTTAAAAG CAGGACGGGA AACTTGAATG AATTCGTTAA TGGCTTTCCC
GAACCGCTCT TTAATTTTTT CAGTGATCAG GATTCGCCAA ATAAATTCGA TTATTTTGAA
CGATCGATCT CCAGTTATAC TTTCCCCTCA ATCGCTATTA CCGATCTTGA CAGTTTCTTG
AGAACTAAAA ATGAATTTTC CCGGGAATAT AATTTGTTTA TTTTCGATGT CGACAAAGGA
GTATCCAATT TGATCGATAT GCTTCCATTT TTTTCCAAAA AAATTATTTT GTTTACTCAG
GCCCAGAGCT ATATAAAGAA TTGGTACTCA ATCAGGGATT TTTCTGATAT GAATTCCGTA
ATTTTGTCTT TAGGTAGTGA ATTAAAATAG
|
|---|
| Protein sequence | MDENSTFSIV DLETTAPFKE GGHIIQIGIS FVKNWKIINN FQTMVNPGVK IPEQIVDLTG
IKNEDVENAP YFEDLARMIH DQLSGTVFVA HNVRYDFPYL NGEFARIKMR RLRLEYVDTV
QLAQIVFPTM NSYKLDELVS KLGINLPRHH RADQDASATA QLFLKIHEHL QEFPQNTLNN
LINHSKSLLG NTETIFQLSK GKRTFPGDRY GPFDIARLKK IDKGQLIKWI EAKKQSSLSK
PLPATVLRPR QESFANILQS KITGKNNKIF SVFSRPRFGK TNAYLDLAVK IAAKGYKILI
IEENYLRRRS TFQKSQSLFP ENKDLFQIPI TRKDFVSLDK LADAFLTEDN PSRQLAKLRV
ISWLLKSRTG NLNEFVNGFP EPLFNFFSDQ DSPNKFDYFE RSISSYTFPS IAITDLDSFL
RTKNEFSREY NLFIFDVDKG VSNLIDMLPF FSKKIILFTQ AQSYIKNWYS IRDFSDMNSV
ILSLGSELK
|
|---|
| |