| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | OEOE_0996 |
|---|
| Symbol | |
|---|
| ID | 4415668 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Oenococcus oeni PSU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008528 |
|---|
| Strand | + |
|---|
| Start bp | 930519 |
|---|
| End bp | 931895 |
|---|
| Gene Length | 1377 bp |
|---|
| Protein Length | 458 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 639669197 |
|---|
| Product | DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| Protein accession | YP_810570 |
|---|
| Protein GI | 116491026 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000205805 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTAAAA AAATCCTAGT TTCAAGTGAT AATACTGTTG CAGAATTGCA GTCAGCTTTA
GAAAAAGTCG ATGTAAAATT CCTTAAAAAA GACAAAAAAG AAGAGCTTTT GCGTTTGGCA
AAAAATTATA ATCGTCGCGT TGATCGAGCT GAGAAGAAAA GTGAAGGAAA CGATGGTTTG
TCTATTAAAA AAGATGATTT AAAAAAAGGA AAATCAAAAG ATAATTCAAA ATCCGGAGAA
AAATCTTCTT CAGCCGCAAC TGCTTTTGAC GAAAAAGCTT ATGCCAAAAG TCTTAAAGCT
TTTATCAAAA AAAATAAGAA GAGTGGCCAG GTCGTTTATG ACGATTTAGA GAATAAAATG
GCCAAACCTT TTGCCTTAAA TGCTGATCAA ATCGACAAAT TAATAGAAAA GGTCGAGGAT
GCTGGTATTT CGATTGTTGA TGAGGATGGC AATCCTTCGG AAAAGTCACT GAAGACCAAG
AGTAATAATC CAAGTCAAGA AGAACTTTCC CAAGCCTCTT CAGCACCAAA GGGTGTCAAA
ATTAATGACC CTGTTAGGAT GTACTTGAAA GAAATCGGAC GGGTTTCATT ACTGAATGCC
GATCAGGAAG TCGCAATTGC CAAAAGAATC GAAAAAGGGG GGTCTGATGG TGAGCGTGCC
CGCCAGGAAC TTGCTGAAGC CAATTTGCGT TTGGTTGTTT CGATCGCAAA GCGTTATGTT
GGCCGCGGAA TGCACTTTTT GGATTTGATT CAAGAAGGAA ATATGGGTTT AATGAAGGCC
GTTGAAAAGT TTGATTATAC AAAAGGATTT AAGTTTTCAA CCTATGCTAC TTGGTGGATT
CGTCAAGCTA TAACTCGTGC AATTGCTGAT CAGGCTCGAA CGATTCGTAT ACCTGTCCAC
ATGGTGGAGA CTATTAACAA GCTTATTCGA ATTCAACGGA CTTTGATTCA GGATCTTGGA
CGTGATCCAA TGCCTGAAGA AATCGGTGCC GAAATGGAAT TAACAGCTGA TAAAGTTCGT
GAAATCCAAA AGATCGCTCA AGAACCTGTC TCTTTGGAAA CTCCGATCGG TGAAGAGAAT
GATTCCCATC TAGGAGACTT CATCGAAGAT AATGAAGGGG AGTCTCCAAT TGAATCGACT
TCTGACCAGA TGTTAAAAGA TCAGTTAGAG GAAGTTCTTG GTACCTTGAC CGAACGTGAG
GAAAATGTTC TTCGTTTGCG TTTTGGCCTT GAAGATGGAA AAACCAGAAC TTTGGAAGAA
GTTGGTCGGG TTTTCGGTGT GACTCGTGAA AGAATTCGGC AGATTGAAGC AAAGGCATTA
CGCAAGCTTC GCCATCCCAG CCGTTCAAAA CAATTAAAAG ATTTTATGGA AGAATAA
|
|---|
| Protein sequence | MTKKILVSSD NTVAELQSAL EKVDVKFLKK DKKEELLRLA KNYNRRVDRA EKKSEGNDGL
SIKKDDLKKG KSKDNSKSGE KSSSAATAFD EKAYAKSLKA FIKKNKKSGQ VVYDDLENKM
AKPFALNADQ IDKLIEKVED AGISIVDEDG NPSEKSLKTK SNNPSQEELS QASSAPKGVK
INDPVRMYLK EIGRVSLLNA DQEVAIAKRI EKGGSDGERA RQELAEANLR LVVSIAKRYV
GRGMHFLDLI QEGNMGLMKA VEKFDYTKGF KFSTYATWWI RQAITRAIAD QARTIRIPVH
MVETINKLIR IQRTLIQDLG RDPMPEEIGA EMELTADKVR EIQKIAQEPV SLETPIGEEN
DSHLGDFIED NEGESPIEST SDQMLKDQLE EVLGTLTERE ENVLRLRFGL EDGKTRTLEE
VGRVFGVTRE RIRQIEAKAL RKLRHPSRSK QLKDFMEE
|
|---|
| |