| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | OEOE_0806 |
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| Symbol | def |
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| ID | 4415866 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Oenococcus oeni PSU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008528 |
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| Strand | - |
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| Start bp | 752739 |
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| End bp | 753296 |
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| Gene Length | 558 bp |
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| Protein Length | 185 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 639669016 |
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| Product | peptide deformylase |
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| Protein accession | YP_810396 |
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| Protein GI | 116490852 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
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| TIGRFAM ID | [TIGR00079] peptide deformylase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000182352 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGAAGATA TTACACGTGA TGGTAATCCG GTTTTGCGTG CGAAAGCCAA ACCAGTTACT
TTTCCGCTTG ATTTAGAAAT AAAAAAACTT GGTCATCGGA TGCTTGAATT TCTTGAGGTT
TCTCAGGATA AAGAAAAAAA CGAAACCTAT CATTTACGTC CGGGTGTCGG CCTCGCTGGT
CCGCAAGTTA ATAAGTCTTT GCAGATGACA GCTTTGCTAA TCCCTTCTTT GAATCCTGAA
GAAGATTCGA AACCGTATTT CCGCGGAATC GTTTATAATC CAAAAATTAC CCGTGAATCA
ATGAAAAGAG CAGCACTGGA AACCGGAGAG GGATGTTTGT CAAAAGACGA AGATACCCCC
GGAATCGTCC TCAGAGCCGA TAAGATTACT GTCGACTACG ATGATGAAAA CGGCGAGCAC
CATTCGATTC GATTAAAAGA TTATCCAGCG ATTGTTTTTC AACATGAAAT CGATCACTTA
AAGGGAATTA TGTACTACGA TCACATCAAT GAATTAGATC CTTGGGCAGT TTCTGAAGAT
GTTGTCTTAA TTAAGTAA
|
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| Protein sequence | MEDITRDGNP VLRAKAKPVT FPLDLEIKKL GHRMLEFLEV SQDKEKNETY HLRPGVGLAG
PQVNKSLQMT ALLIPSLNPE EDSKPYFRGI VYNPKITRES MKRAALETGE GCLSKDEDTP
GIVLRADKIT VDYDDENGEH HSIRLKDYPA IVFQHEIDHL KGIMYYDHIN ELDPWAVSED
VVLIK
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