| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | OEOE_0093 |
|---|
| Symbol | |
|---|
| ID | 4415752 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Oenococcus oeni PSU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008528 |
|---|
| Strand | + |
|---|
| Start bp | 83933 |
|---|
| End bp | 86101 |
|---|
| Gene Length | 2169 bp |
|---|
| Protein Length | 722 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 639668361 |
|---|
| Product | topoisomerase IA |
|---|
| Protein accession | YP_809757 |
|---|
| Protein GI | 116490213 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0550] Topoisomerase IA |
|---|
| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAACAG TTATTTTGGC CGAGAAGCCT AGTCAAGCCC GATCATATGT GGAAGCACTT
AAGAACAGCA CGAAAAAAGA GGGTTACTTT TCAGTCAGTG ATCCTGTTTT AGCCAATGAG
ACCTTTATAA CCTATGGTTT TGGTCATTTA GTAGAATTGG CAACGCCGGA AAAATACGAT
CAAAAGTACA AACGATGGTC CTTATCTAAT TTGCCGATTT TCCCCGATAA GTACAAATTT
ATTGTGCCTA GGGACAAGAA AACCCAGTTT AAAATTGTCA AAGATTTGCT GATGAAAGCA
GATACGATTA TTATTGCGAC CGATAGCGAT CGCGAAGGTG AAAATATTGC TTGGTCGATC
ATGAATCAAG CAAAAATCAA TTTGAAAAGT AAAACGATCA AACGCTTATG GATCAACTCG
CTTGAAAAAG ATGCTATCCT AAATGGTTTT AAAAATTTAA AAGATGCTTG GAATTATTAC
CCTGCATACC AAGAAGCTCA AACCAGACAA ATTAGCGATT GGCTGGTTGG AATGAACGGA
AGTCCACTAT ATACATTGCT ATTAAGACAA AGCGGAGTTC GTGGTGTCTA TTCAATTGGC
CGGGTCCAGA CACCGACTCT TTATATGGTC TACCAAAGAG ATCAGGAAAT TAAAAACTTT
AAGCCGGAGC CTTATTTTGA AATAAGCGCC GAAATTGAAG CTAATCGGCA AAAATTCGTT
GCCAAATTAG ATCCCTATCA ACGCTTTAAG GATGAAGAAA GTCTCACTAT ATATATGGAG
GCTAAAGGCC TTCGGACCGG CTTCCAAGAG GCCTTAACCA AAGATGTTTT ACAAGAGACG
AAAAGAACAG CTAGTCCGCG CTTGTTCTCT CTTTCCAGTC TGCAAAGTGC GATTAACAAA
CGCTATCACG CTAGTGCCAG CGATGTCTTA AAAGCTGTTC AAGCACTATA TGAGGCTAAG
CTGCTTACTT ATCCAAGAAC TGATTGCAAT TATATTACCG ATCAAGAATT CAGTTATTTG
CTTTCAAATC TAATGGGATA TTTGAGTTTG GTGTCTAGTC AAGTCTCTTT AAATAATACT
GAAGCAAATA AACGTTATGT AAACAGTAAA AAAGTCCAGG AACATCATGC TATTATTATG
ACTAAGACTA TTCCAAATAA AGCGAAATTG GCAGCACTGC CTAAGTTGCA ACAACAAGTT
TATGGCTTAG TTTTGAGAAC AACGCTAGCT ATGTTTGCTG ATCCTTATGA ATATGAGCAA
ACAATAATTA TTACTGAGGT TGGCAAAGCC AATTTTAAGG CAACCGGAAA TGTGCCAATC
AAACAAGGCT GGAAATTACT ATTTGCAGAC GATAAAGACA AAAATGATGA AACGGTTGTA
ACGCTGCCCA AGGTGACAAA AAACCAGAAA GTTCAAGCCG ACTTGAAAAC ACCGCAAAAG
GAAACTACCC CACCTGTACC CTTTACCGAA GGTACATTAA TCACGGCTAT GAAAACTGCC
GGTAGAACTC TCGATGATGA AGAAGCCCAA TCAATCTTAA AAGATGTTGA AGGGATCGGC
ACCGAAGCAA CCAGAGCTAA CGTTCTTGAG GTCTTAAAAA AACGCGGATA TTTGCTTTCT
AAAAAGAATC AGCTGCATGT TAGCGAACAG GGAATTACTT TATGTACAGC TGTTGAGCTT
GAACCATTAC TCACCAGCCC GGAAATGACG GCCAAATGGG AACTTGCCTT AAAAGAAATA
AGCCAAAAGA AACGCAGCCA GGAGAGTTTC TTAATTCAAA TTAAAAAATT TGTATCAAAA
TTGGTCGACG AAGTGCCGAC ACAAATGAAA CAAAGTGAAG GTTTATCCAA ACAAGTTAAA
AACCAAAAAA TTGTTGAAAT CCAAGACCGG CAACAAGAAG CAATTGGCAG GTGTCCTCTT
TGCAAAGAAG GGATGATTGT TGATAAGGGC AAATTTTACG GTTGCACAAA TTATAAGGCT
GCTGTTCCGT GCCGTTTCAC TCTACCGAAA AAATGGAGCG AAAAGACAAT TGGTAAAACA
GCTATCAAAG CTTTAATTAC AAAGGGTGAA AGTAACAGGC TAAAAGGATT CAAGAGTAAG
AAAAGCGGTA AGAAATTCGA TGCCAAGTTG AAATTGGAGG GCAGTAAATT AAGTTTTGAT
TTTAGCTAA
|
|---|
| Protein sequence | MTTVILAEKP SQARSYVEAL KNSTKKEGYF SVSDPVLANE TFITYGFGHL VELATPEKYD
QKYKRWSLSN LPIFPDKYKF IVPRDKKTQF KIVKDLLMKA DTIIIATDSD REGENIAWSI
MNQAKINLKS KTIKRLWINS LEKDAILNGF KNLKDAWNYY PAYQEAQTRQ ISDWLVGMNG
SPLYTLLLRQ SGVRGVYSIG RVQTPTLYMV YQRDQEIKNF KPEPYFEISA EIEANRQKFV
AKLDPYQRFK DEESLTIYME AKGLRTGFQE ALTKDVLQET KRTASPRLFS LSSLQSAINK
RYHASASDVL KAVQALYEAK LLTYPRTDCN YITDQEFSYL LSNLMGYLSL VSSQVSLNNT
EANKRYVNSK KVQEHHAIIM TKTIPNKAKL AALPKLQQQV YGLVLRTTLA MFADPYEYEQ
TIIITEVGKA NFKATGNVPI KQGWKLLFAD DKDKNDETVV TLPKVTKNQK VQADLKTPQK
ETTPPVPFTE GTLITAMKTA GRTLDDEEAQ SILKDVEGIG TEATRANVLE VLKKRGYLLS
KKNQLHVSEQ GITLCTAVEL EPLLTSPEMT AKWELALKEI SQKKRSQESF LIQIKKFVSK
LVDEVPTQMK QSEGLSKQVK NQKIVEIQDR QQEAIGRCPL CKEGMIVDKG KFYGCTNYKA
AVPCRFTLPK KWSEKTIGKT AIKALITKGE SNRLKGFKSK KSGKKFDAKL KLEGSKLSFD
FS
|
|---|
| |