Gene LACR_1659 details

Gene Information

• Locus tag: LACR_1659
• Symbol: rimM
• ID: 4433176
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Lactococcus lactis subsp. cremoris SK11
• Kingdom: Bacteria
• Replicon accession: NC_008527
• Strand: -
• Start bp: 1568018
• End bp: 1568533
• Gene Length: 516 bp
• Protein Length: 171 aa
• Translation table: 11
• GC content: 34%
• IMG OID: 639667368
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_809578
• Protein GI: 116512362
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAAAACT TTTACAAAGT AGGAACAATT GTTAATACAC AGGGACTTCA AGGTGAAGTT 
CGAGTACTAC CATCAACAGA TTTTGCTAAC GAGCGCTTTT CAAAAGGGGC AGTATTAGCA 
CTTTTTGATG ATAAAGATAA CTATATTCAA GATTTAAAAG TGAAATCTGG TCGATTACAA 
AAGAATTTTT ATGTGGTCAA ATTTGAAGGA TTTTATCATA TCAATGATGT CGAAAAATAT 
AAAGGTTATG TTGTTAAAAT TGCGCAAGAA AATCAAGAAG AGTTAAATGA TGGGGAATTT 
TACTATCATG AAATTATTGG AAGTGATGTT TATGAAAATG ACATTTTAAT TGGTCAGATC 
TCTGAAATTC TTCAACCAGG TGCCAATGAT GTCTGGGTCG TTAAACGTAA AGGAAAACGT 
GATTTACTTT TACCTTATAT CCCACCTGTT GTCCTGAAAG TAGATGTGGC TCAGCATCGA 
GTTGATGTGG ACATCATGGA AGGATTGGAT GACTAA 

 

Protein sequence

MENFYKVGTI VNTQGLQGEV RVLPSTDFAN ERFSKGAVLA LFDDKDNYIQ DLKVKSGRLQ 
KNFYVVKFEG FYHINDVEKY KGYVVKIAQE NQEELNDGEF YYHEIIGSDV YENDILIGQI 
SEILQPGAND VWVVKRKGKR DLLLPYIPPV VLKVDVAQHR VDVDIMEGLD D