Gene LACR_1572 details

Gene Information

• Locus tag: LACR_1572
• ID: 4434599
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Lactococcus lactis subsp. cremoris SK11
• Kingdom: Bacteria
• Replicon accession: NC_008527
• Strand: -
• Start bp: 1482894
• End bp: 1484693
• Gene Length: 1800 bp
• Protein Length: 599 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 639667287
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_809497
• Protein GI: 116512281
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.337602
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAGTAT TAGATAAAGT AAATGAACCC AAAGACATCA AAAATCTTAC ACCTCTAGAA 
CTAGAAGAGC TCGCTATAAA TGTGCGCGAT GCAATTCTTA ATCGTGTGAG TCAATATCCA 
GGAGGTCATC TCGGACCAAA TCTTGGTGTG GTAGAAATGA CTGTTGCTTT ACATAAAGTC 
TTTAATTCAC CTGTTGATAA ATTAATTTGG GACGTTAGTC ATCAAAGCTA TCCGCATAAA 
GTTTTAACGG GGCGCAAAGA ATTTTTTACT GACAATGACA AGTTTTCTGG AACAACAGGC 
TATACAGACC CTGAAGAAAA TGAACATGAC TTTATACGAG TAGGTCATAC ATCAACATCT 
ATTGCAACAG CTATGGGATA TGCCTTAGCT CGAGATATGA AAGGAAAAAA TGGAAATATT 
GTAGCCATCA TTGGTGATGG AGCGCTATCA GGAGGACTTG CATTTGAGGG ACTTGATGGT 
GCAGGTACAC TTAATGGGAA TCTTATTATT ATTGTAAATG ATAATGAAAT GGCCATCACC 
GAAAATCATG GAGGAATCTA TCAACATCTT GCAGATCTTC GAGCAAGTAA AGGAACTTCA 
GCAAATAACC TTTTTAAATC ATTTGGGCTT GATTACCGAT ACCTTGAGGA GGGAAATGAT 
ATCCAAAGTT TGATTGCCCT TTTTGAATCA GTAAAAGACA TTAATCGTCC AATTGTTCTT 
CATATTCACA CAGAAAAAGG ACATGGTTAT AAACCAGCAG TAGAAAATAA AGAAGGAATG 
CACCAAGTCT TTGCACCTTT TGATATTGCT ACAGGTCAAC CAGTCAATAG CTCAACAAAT 
ACCGTTCGCA GCTATAATAA TGTATTTCTT GACTTTATGG AAGAAAAGTT AGCCAAAGGT 
GACAATCTTA TCGCCATTAA TGCCGCAATT CCAATGTTCT TTGGCCTGTC TCAATTTGCC 
AAGAATCATC CAAAAAATTA TGTTGACGGA GGAATTGCCG AACAATATAC AGTGACACTT 
GGTGGAGCAA TCGCGGCAGC AGGAACTCGA GCTATAATTT TCCAAAACGC AACTTTCTTA 
CAACGTGCTT ATGACCAACT TAATCATGAC TTGGCACTGA ATAAAGAACC AGCAATTGTT 
ATTATCAGTA ACAGCCAAAT TGGCGGGACA AATGATACTC ACCAAGGTAG TTTTGTTTAT 
AGTCAAACAT CAAATATTCC CAATGTAATT GACCTTGCTG CAACAAGTGA GGAAGACCTT 
TTTGCAATGC TTAATTGGGC ATATAATCAA CATGAATATC CAGTGTTTAT ACACTTGCCA 
GAGCATACTT TGGAAAATCG TCCAACAAAA ATTACTGATT TTAGCAAACC TCATTATGAA 
GTCGTTAAGT CTGGCGAAAA AGTTGTACTC TTGGGTCTTG GTGCAATGCT TGAAAAAGCT 
GAAAATGTCG CAAAAGAACT TGAAAAATCA GGATTTAATC CAACGGTTGT AAATCCATTC 
TTTGTAAACC TTTTGGATGT AAATGCTTTA GATAAATTAG CTGAAACTCA TGGACTTTTT 
GTTACGATTG AAGATGGCAC TAAAGATGGG GGAGTTGGTC AAAAAGTGGC TACTTATTTG 
GCAAGCAAAG GGATAAAAAC ACTTGTATAT GGTGCAGATA CTGAGTTTAT TGATGCTGTT 
CCCAAAAATG AACTTTACAA TCGATATCAC ATAGCACCAG AACTTATGGC AACTGATATT 
ATTGAAGCAA CAAAAGAATC TAAAGCGCCT AATTTATTTA AGAAAATATT TTCTAAATAA 

 

Protein sequence

MTVLDKVNEP KDIKNLTPLE LEELAINVRD AILNRVSQYP GGHLGPNLGV VEMTVALHKV 
FNSPVDKLIW DVSHQSYPHK VLTGRKEFFT DNDKFSGTTG YTDPEENEHD FIRVGHTSTS 
IATAMGYALA RDMKGKNGNI VAIIGDGALS GGLAFEGLDG AGTLNGNLII IVNDNEMAIT 
ENHGGIYQHL ADLRASKGTS ANNLFKSFGL DYRYLEEGND IQSLIALFES VKDINRPIVL 
HIHTEKGHGY KPAVENKEGM HQVFAPFDIA TGQPVNSSTN TVRSYNNVFL DFMEEKLAKG 
DNLIAINAAI PMFFGLSQFA KNHPKNYVDG GIAEQYTVTL GGAIAAAGTR AIIFQNATFL 
QRAYDQLNHD LALNKEPAIV IISNSQIGGT NDTHQGSFVY SQTSNIPNVI DLAATSEEDL 
FAMLNWAYNQ HEYPVFIHLP EHTLENRPTK ITDFSKPHYE VVKSGEKVVL LGLGAMLEKA 
ENVAKELEKS GFNPTVVNPF FVNLLDVNAL DKLAETHGLF VTIEDGTKDG GVGQKVATYL 
ASKGIKTLVY GADTEFIDAV PKNELYNRYH IAPELMATDI IEATKESKAP NLFKKIFSK