| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LACR_0571 |
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| Symbol | |
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| ID | 4433261 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Lactococcus lactis subsp. cremoris SK11 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008527 |
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| Strand | + |
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| Start bp | 526643 |
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| End bp | 527986 |
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| Gene Length | 1344 bp |
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| Protein Length | 447 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 639666354 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_808568 |
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| Protein GI | 116511352 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.750581 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | TTGGCAGCAA ATAAAAAAAG AATAAGTCAA ATTTCGAAAG AAACAGGAGT TCAAAACCGT
GTCTTGGTTG AGAAAGCCCA AGAAATTGGC TTACTTGTAA AATCACATTC AAGTTCAGTT
GGACCTGGTG AGGAACGTCG TCTTCTTGAA GCATTAAATG TTAAACCTGT TGTTGTTGAA
AAGATGGATA GTCCTAAAAC ATTAGCGAGA GTTGAAATCA AAGAAAATGG TGATACTTTT
AATGTAAAAG CTTATGAAAA AGCAGTTAAA GGCTATATTA CCAAACGTAA ACCTTTGGGT
GAAGCGCTTG ATGAAGAAAT CATGGATGAG CTTTCTGTTA AATTTGGAAT TGTGGATGAT
GCTCTTGAAG ATTTGTTCAA ACAAATTCAA GATGCAGGAA TTTCAATTGT GGATAAAGAT
GGAAATCCAA GTCCTTTGGC TCTTGTAACT GATGAAATTG AAAAAGAAGA AGTTTCAGAT
ACTGCAATGG ATGAAATCGT TACGAATGTT CGTATTGATG ATCCTGTTCG TATGTATCTT
AAAGAAATTG GTCGTTATCC ATTGATTTCT CTTGATGAAG AAACGAAACT TGCTGAAGCA
ATTATTGCTG GTGGTGAAGG GGCAGAATTT GCGAAACAAA TGCTTGCCGA AGCCAACTTG
CGTTTGGTTG TTTCAATTGC AAAACGTTAT TCTGGACGTG GAATGCAATT TTTGGATCTG
ATTCAAGAAG GAAATATGGG CTTGATGAAA GCTGTGGATA AGTTTGACCA CACGAAAGGA
TTCAAGTTCT CTACTTATGC CACTTGGTGG ATTCGCCAAG CGATTACACG TGCAATTGCT
GACCAAGCCC GCACGATTCG TATTCCAGTG CATATGGTTG AAACAATCAA TAAATTGATT
CGTGTTCAAC GTAATCTTTT GCAAGAACTC GGACGCGACC CTTCACCTGA AGAAATTGGT
AAAGAGTTGC ACATGGCGCC AGATAAAGTT CGTGAAGTTC TGAAAATTGC TCAAGAACCA
GTATCACTCG AAACGCCTAT TGGTGAAGAA GATGATTCTC ATCTTGGTGA CTTCATTGAG
GATGATGTCA TCGAATCACC TGTTGATTAT ACAAACCGTA TTCTTTTACG TGAACAGTTA
GATGAAGTGA TGGATACTTT GACTGACCGT GAAGAAAATG TTTTGAGAAT GCGATTTGGT
CTTGATGATG GACGGATGCA TACTTTGGAA GATGTTGGAA AACAATTCAA AGTGACTCGT
GAACGTATTC GTCAAATTGA AGCAAAAGCA ATCAAAAAAC TTCGTCACCC ACGTCGTTCT
AAACCATTGC GTGACTTTAT GTAA
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| Protein sequence | MAANKKRISQ ISKETGVQNR VLVEKAQEIG LLVKSHSSSV GPGEERRLLE ALNVKPVVVE
KMDSPKTLAR VEIKENGDTF NVKAYEKAVK GYITKRKPLG EALDEEIMDE LSVKFGIVDD
ALEDLFKQIQ DAGISIVDKD GNPSPLALVT DEIEKEEVSD TAMDEIVTNV RIDDPVRMYL
KEIGRYPLIS LDEETKLAEA IIAGGEGAEF AKQMLAEANL RLVVSIAKRY SGRGMQFLDL
IQEGNMGLMK AVDKFDHTKG FKFSTYATWW IRQAITRAIA DQARTIRIPV HMVETINKLI
RVQRNLLQEL GRDPSPEEIG KELHMAPDKV REVLKIAQEP VSLETPIGEE DDSHLGDFIE
DDVIESPVDY TNRILLREQL DEVMDTLTDR EENVLRMRFG LDDGRMHTLE DVGKQFKVTR
ERIRQIEAKA IKKLRHPRRS KPLRDFM
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