Gene LACR_0300 details

Gene Information

• Locus tag: LACR_0300
• Symbol: rpsD
• ID: 4433237
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Lactococcus lactis subsp. cremoris SK11
• Kingdom: Bacteria
• Replicon accession: NC_008527
• Strand: +
• Start bp: 277772
• End bp: 278383
• Gene Length: 612 bp
• Protein Length: 203 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 639666096
• Product: 30S ribosomal protein S4
• Protein accession: YP_808330
• Protein GI: 116511114
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0522] Ribosomal protein S4 and related proteins
• TIGRFAM ID: [TIGR01017] ribosomal protein S4, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.00214384
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCACGTT ATACTGGTCC ATCATGGAAA CAATCACGCC GTTACGGAAT CTCACTTACT 
GGTTCTGGTA AAGAAATCGC ACGTCGTAAC TACGTACCTG GACAACACGG TCCAAACAAC 
CGTTCAAAAC TTTCTGAATA CGGTCTTCAA TTGGCTGAAA AACAAAAACT CCGTTTTACT 
TACGGTCTTT CTGAACGTCA ATTCCGTAAC TTGTACGTTG CTGCAACTAA AGTTAAAGAA 
GGAACTGTTG GTTACAACTT CATGACTTTG CTTGAACAAC GTCTTGATAA CGTTGTTTAC 
CGTCTTGGTC TTGCGACTAC TCGTCGTCAA GCACGTCAAT TCGTAAACCA CGGTCACATC 
CTTGTTGATG GAAAACGCGT TGATATCCCA TCATTCCGCG TACAACCTGG TCAAGTGATT 
TCAGTTCGCG AAAAATCTAT GAAAGTTCCT GCAATCCTTG AAGCTGTTGA AGCTACTAAA 
GGTCGCGCTA ACTTCGTATC ATTTGATGCT GACAAACTTG AAGGAACTCT TGTTCGTCTT 
CCTGAACGTG ATGAAATCAA CCCAGAAATT AACGATGCTC TTATCGTCGA ATTCTACAAC 
AAAATGATGT AA 

 

Protein sequence

MSRYTGPSWK QSRRYGISLT GSGKEIARRN YVPGQHGPNN RSKLSEYGLQ LAEKQKLRFT 
YGLSERQFRN LYVAATKVKE GTVGYNFMTL LEQRLDNVVY RLGLATTRRQ ARQFVNHGHI 
LVDGKRVDIP SFRVQPGQVI SVREKSMKVP AILEAVEATK GRANFVSFDA DKLEGTLVRL 
PERDEINPEI NDALIVEFYN KMM