Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | LACR_0295 |
Symbol | |
ID | 4433232 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Lactococcus lactis subsp. cremoris SK11 |
Kingdom | Bacteria |
Replicon accession | NC_008527 |
Strand | + |
Start bp | 274267 |
End bp | 275388 |
Gene Length | 1122 bp |
Protein Length | 373 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 639666091 |
Product | endo-1,4-beta-xylanase D |
Protein accession | YP_808327 |
Protein GI | 116511111 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0385637 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTCAAA AAAGAAGTGC AAGATCAAAG AGTTCAAAAA AGGCCTTTTG GAAACTGACG TTGATTATGG GAGCCCTGCT GATTGTTGTC GCTGGAATCG GGACATATTA TTACGATCAA GGAGTTCGTA AGCAGAATAT TGCTTATGAA AAGCAGGTAA ATGAAGCAAA AGAAGCCAAA GATAAAGCCT ATAATTCCAG AAAAACAAGC GACATTAATG AAGCAAAAAA ACTAATTGTT AAGCTCCATG AGAAAGATAA AAGTAGTCTA AATCAATCAA TTACTCAACT TTTGGCATAT TTGACAGATA TTGATAAAGT GAGTCAACTG GTTGCTAAAG AGCATCAAAA TATCACCGAA GATACGATAA AAGAAGCAGA GCAAGCTCTT GAACTTTTAA ATGCTTCTTA TGAAAAAACA GATAAAGAAA AATTTGCTCA ACAAATCGCT ATTGATAAGC AAGTTCTTGT TGAACGACAA AAAGAGGCTG AACGAATTGC TGATGAAAAA AATAAATTAG CAAATCAAAA ATTGATTGCT TTGACTTTTG ATGATGGTCC AAACCCGACT ACCACTCCTC AGTTACTAAA AACATTGAGT GCTGCAAAAG TTCCCGCTAC CTTTTTTGCT TTGGGTAAAG AGGCTCAGCA GTATCCCGAT ATTATTAAAG AGGAATCTGA CTTAGGAAAT GAAGTCGCTT CACATACTTG GGATCATAAA GATTTGGTGA CTTTGTCACC GGCTCAACAA AAACAAGAAA TTGAAAGTGC CAATCAATTA ATCAATAAGA TTACAGGGAA AAATGTCACG CTCTTTAGAC CTCGGTACGG AAGTTACAAT AATTCTGTAT TGTGCCAAAC TGATTTAACA GCAGTCAACT GGTCAGTGGA TACTAATGAC TGGCGTTACC ATACAAGCGC ACCGGTCGTT CAAAATGTAG CGACTTATGC TCATGATGGT GCGATTATTT TGATGCATGA TATTCATCAG TGGTCAGTAG ATGCCGTACC ACAAATTATT CAAAATTTGA AAGCACAAGG ATATACTTTT GTGACTGTCA GTACTTTATT GGATATTCGA AATGGGGGCG CAAAAGCACA ACAAGTGTAT TTTGGCAGAT AA
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Protein sequence | MSQKRSARSK SSKKAFWKLT LIMGALLIVV AGIGTYYYDQ GVRKQNIAYE KQVNEAKEAK DKAYNSRKTS DINEAKKLIV KLHEKDKSSL NQSITQLLAY LTDIDKVSQL VAKEHQNITE DTIKEAEQAL ELLNASYEKT DKEKFAQQIA IDKQVLVERQ KEAERIADEK NKLANQKLIA LTFDDGPNPT TTPQLLKTLS AAKVPATFFA LGKEAQQYPD IIKEESDLGN EVASHTWDHK DLVTLSPAQQ KQEIESANQL INKITGKNVT LFRPRYGSYN NSVLCQTDLT AVNWSVDTND WRYHTSAPVV QNVATYAHDG AIILMHDIHQ WSVDAVPQII QNLKAQGYTF VTVSTLLDIR NGGAKAQQVY FGR
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