Gene LACR_0027 details

Gene Information

• Locus tag: LACR_0027
• ID: 4432875
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Lactococcus lactis subsp. cremoris SK11
• Kingdom: Bacteria
• Replicon accession: NC_008527
• Strand: +
• Start bp: 26036
• End bp: 27859
• Gene Length: 1824 bp
• Protein Length: 607 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 639665836
• Product: phosphotransferase system, mannitol-specific IIBC component
• Protein accession: YP_808078
• Protein GI: 116510862
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG2213] Phosphotransferase system, mannitol-specific IIBC component
• TIGRFAM ID: [TIGR00851] PTS system, mannitol-specific IIC component

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.03795
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTGATA CTGTAAGCTT AAAAGTACGA GTTCAAAAAC TTGGTACTGC ATTATCTAAT 
ATGGTAATGC CCAATATTCC TGTTTTAATT GCCTGGGGGG TGTTGACGAT GTTCTTCATT 
CCTGATGGTT TTACACCTAA TAAAACTTTT GCAGCGATGG TTAGTCCCAT GCTTGCTTTT 
CTTATTCCCT TAATGATTGG TTATACCGGT GGGAAAAATA TTTATGAGCT CCGTGGAGGA 
GTAGTTGGTG CGATTGCAAC CTTTGGTTCA ATAATTGCGA CAGCTAGTAT TTCTGTAGGT 
GGTCTGAATG CTAAAGGAAA TGTTCCTATG ATTTTAGGAG CGATGATATT AGGACCTTTT 
GGCGCTTGGT TAATAAAAAA ATTTGATGAA TATATTCAAC CACATATTAA AGCGGGCCTT 
GAAATGCTTA TAAATAACTT TTCAGCAGGC TTAGTGGGAT TTGGTTTATC TCTTTTTGCT 
GTTAAAGTGG TTGGCCCACT TGTGGCTTGG CTAACAGATG TGATGGGACA TGGCGTAGAC 
TTTTTAATCT CTAACCATTT AATTCCTCTT GCTAATCTTT TTATTGAGCC AGCAAAAATT 
TTATTTTTAA ATAATGTAAT CAATCAGGGA ATCTTATCAC CTTTAGGAAT TCAACAGGTT 
TCTGAAAATG GGAAATCGCT TCTATTTTTA TTGGAAGCTA ATCCCGGTCC AGGGCTTGGA 
ATTCTGATTG CCTTTATGCT TTTTGGTAAG GGTTCAGCTA AAGCAACAGC ACCTGGTGCG 
ATTTTAATTC AATTTGTTGG TGGAATCCAT GAAATTTACT TTCCTTATGT CATGATGAAA 
CCTGCTCTCT TTTTTGCCGT CATGGCTGGC GGGGTGTCTG GAACTTTAAC AAATAACTTA 
TTAGGTTCTG GTCTTGCAGC TCCTGCTTCA CCTGTTTCGA TTATTGCAAT CACGGGAATG 
GCATCTGGTA AATCAGCGGG AGGCTTTGCA AATGTTCTTT GCGTCTGGGC AGGGATTGCT 
GTAGCAGCAA TTGTCTCTTT TCTTGTAGCA GCCTTCATTT TAAAACGAGA TAAATCGATG 
ATTGATGATT CTGCTTTTGA AAATGCCAAA GTAGGAGTAG CTACTGATAA GGCTGTCAGT 
AAGGGACAAG ACTCTGTCAG CAATATTGTT ACTGACAGAG TCGATTTTTC TGCGATTAAA 
CACATCATTT TTGCTTGTGA TGCGGGAATG GGTTCATCGG CCATGGGTGC TTCTATTTTG 
AGAAATAAAG TCAAAAAAGC TGGTTTGGGG CAAGATGTTA CGAATGTCGC CATTGCTAAC 
TTAAAAGCCG GTTTTGACAC AATTGTCGTC ACACAAGAGG AACTTGCGCC ACGAGCTGCG 
ACAATGGCTC CTGATGCTCA TAGATATTCA GTGGCTAATT TCCTTAACTC ACCTCGTTAC 
GATGAAATTA TCAGTAATCT AATGAATACT GACGAAGCTG TCAGTGAACC TATCATTGCT 
GACGACTTGG TCAGTAGAGA AGAGATAGAT TTGAATCAAA TTGATGAAGT TGTTTTCGCT 
CATGATGGTT TACACATTGG TTCAAGTACT ATGGGCAAAG AAACCTTACA GGCAATTTTT 
AGCAGACATG ATGTCAAGAT TCCTATTTCT GATGTTGAAT TTATTGGATT AGGCGCATTT 
AATGCTAAAA ACATCATGAT TGTTACAAAA GAAGAATTCA CGACAGTAGC AAAACAGAAA 
GCTCCAAATG CTCAACATCT TTCCGTTGAG TCTTTGATTA CTACTCCAGA ATACATCAAT 
ATGGTAAATC GAATGAACAA ATAA 

 

Protein sequence

MTDTVSLKVR VQKLGTALSN MVMPNIPVLI AWGVLTMFFI PDGFTPNKTF AAMVSPMLAF 
LIPLMIGYTG GKNIYELRGG VVGAIATFGS IIATASISVG GLNAKGNVPM ILGAMILGPF 
GAWLIKKFDE YIQPHIKAGL EMLINNFSAG LVGFGLSLFA VKVVGPLVAW LTDVMGHGVD 
FLISNHLIPL ANLFIEPAKI LFLNNVINQG ILSPLGIQQV SENGKSLLFL LEANPGPGLG 
ILIAFMLFGK GSAKATAPGA ILIQFVGGIH EIYFPYVMMK PALFFAVMAG GVSGTLTNNL 
LGSGLAAPAS PVSIIAITGM ASGKSAGGFA NVLCVWAGIA VAAIVSFLVA AFILKRDKSM 
IDDSAFENAK VGVATDKAVS KGQDSVSNIV TDRVDFSAIK HIIFACDAGM GSSAMGASIL 
RNKVKKAGLG QDVTNVAIAN LKAGFDTIVV TQEELAPRAA TMAPDAHRYS VANFLNSPRY 
DEIISNLMNT DEAVSEPIIA DDLVSREEID LNQIDEVVFA HDGLHIGSST MGKETLQAIF 
SRHDVKIPIS DVEFIGLGAF NAKNIMIVTK EEFTTVAKQK APNAQHLSVE SLITTPEYIN 
MVNRMNK