Gene LACR_D20 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLACR_D20 
Symbol 
ID4405873 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLactococcus lactis subsp. cremoris SK11 
KingdomBacteria 
Replicon accessionNC_008506 
Strand- 
Start bp22013 
End bp22972 
Gene Length960 bp 
Protein Length319 aa 
Translation table11 
GC content35% 
IMG OID639654621 
ProductABC-type oligopeptide transport system, ATPase component 
Protein accessionYP_796547 
Protein GI116326627 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase
[COG4608] ABC-type oligopeptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGCGAAA TTCTTAATTT AAAGGACTTA AAAGTTTATT ATCCTATTCG ATCTGGTTTC 
TTTAATCGAG TGACAGATAA TGTTTTAGCC GTTGATGGAG TAGATTTAAC GATTCATGAA 
GGAGAAACTG TCGGTTTAGT TGGTGAATCT GGCTCTGGAA AATCAACGAT TGGCAAAACA 
ATTGTTGGTT TAGAACAAAT GACATCAGGA CAATTGATTT ACAAAGGACA AGATGTCAGC 
AAAAAAAAGA TAAGAAACCA GCTCAAATAC AATAAAGATG TTCAAATGAT TTTTCAAGAT 
GCATTTTCGA GTTTGAATCC ACGGAAAACA ATTTACGATA TCATTGCGGA GCCTATTCGA 
AATTTTGAAA AAATAGATGC TAATACGGAA AATAAACGGA TTCATGAATT ATTGGATATT 
GTTGGACTAC CTAAACAAGC TTTAGAACAG TATCCTTTCC AATTTTCTGG AGGTCAACAA 
CAAAGAATTG GAATCGCACG GGCAGTTGCT ACTAATCCTA AGTTAATTGT GGCAGATGAA 
CCAGTTTCAG CATTAGACTT ATCTGTTCAA GCTCAGGTTT TGAATTTCAT GAAGCTCATT 
CAAAAGGACT TGGGAATTGC ATTTCTTTTT ATTTCTCATG ATTTAGGGGT TGTCCGCCAT 
ATGACTGATA ATATTGCAGT CATGCACAAC GGTCGAATTG TCGAAAAAGG AACACGAAGA 
GATATTTTTG ATGAGCCACA GCACATTTAT ACTAAACGAC TCTTATCTGC TATCCCTTCG 
ATTGATGTTA CAAGAAGAGC GGAAAATCGG AAAAACCGTC TAAAAGTTGA ACAAGACTTT 
GAGGATAAAA AAGCAAATTT TTATGACAAA GATGGACACG CTTTGCCCTT AAAAAAATTA 
AGTGAAAGTC ATTGGGCTGC TTTGCCAAAA GGAGGGGAAA ATGTGGAAAG TAATTATTAG
 
Protein sequence
MSEILNLKDL KVYYPIRSGF FNRVTDNVLA VDGVDLTIHE GETVGLVGES GSGKSTIGKT 
IVGLEQMTSG QLIYKGQDVS KKKIRNQLKY NKDVQMIFQD AFSSLNPRKT IYDIIAEPIR 
NFEKIDANTE NKRIHELLDI VGLPKQALEQ YPFQFSGGQQ QRIGIARAVA TNPKLIVADE 
PVSALDLSVQ AQVLNFMKLI QKDLGIAFLF ISHDLGVVRH MTDNIAVMHN GRIVEKGTRR 
DIFDEPQHIY TKRLLSAIPS IDVTRRAENR KNRLKVEQDF EDKKANFYDK DGHALPLKKL 
SESHWAALPK GGENVESNY