Gene LACR_D01 details

Gene Information

• Locus tag: LACR_D01
• ID: 4405893
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Lactococcus lactis subsp. cremoris SK11
• Kingdom: Bacteria
• Replicon accession: NC_008506
• Strand: -
• Start bp: 105
• End bp: 1811
• Gene Length: 1707 bp
• Protein Length: 568 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 639654604
• Product: cellobiose-specific PTS system IIC component
• Protein accession: YP_796530
• Protein GI: 116326610
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG1440] Phosphotransferase system cellobiose-specific component IIB; [COG1455] Phosphotransferase system cellobiose-specific component IIC
• TIGRFAM ID: [TIGR00394] phosphotransferase system, lactose specific, IIC component; [TIGR00410] PTS system, lactose/cellobiose family IIC component; [TIGR00853] PTS system, lactose/cellobiose family IIB component

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.142649
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCATAAAC TCATTGAACT TATTGAGAAA GGGAAACCAT TCTTTGAGAA AATCTCTCGA 
AACATCTATC TTCGTGCTAT TCGTGATGGA TTTATTGCTG GTATGCCAGT CATCCTTTTC 
TCATCTATCT TTATCCTTAT TGCCTATGTC CCAAATGCTT GGGGATTCCA CTGGTCAAAA 
GACATTGAGA CCTTCTTGAT GACTCCTTAT AGCTATTCGA TGGGTATCCT AGCATTCTTT 
GTTGGTGGTA CTACCGCTAA AGCTTTGACG GACTCAAAGA ACCGTGACCT ACCTGCGACC 
AATCAGATTA ACTTCTTATC TACGATGCTA GCGTCTATGG TAGGGTTCCT TTTGATGGCA 
GCTGAGCCTG CAAAAGAAGG AGGCTTCTTG ACAGCCTTCA TGGGAACAAA AGGCCTTTTG 
ACAGCATTTA TCGCAGCCTT TGTGACAGTT AATGTTTATA AAGTCTGTGT GAAAAATAAT 
GTTACCATTC GTATGCCTGA AGATGTTCCA CCAAATATCT CTCAAGTATT TAAGGACTTG 
ATTCCGTTCA CCGTCTCAGT TGTTCTCCTA TATGGACTTG AACTCCTTGT TAAGGGAACT 
CTTGGTGTAA CTGTTGCAGA ATCAATCGGT ACCCTTATTG CTCCTCTTTT CTCAGCTGCA 
GATGGTTACC TTGGAATTAC ACTTATCTTT GGTGCTTATG CCTTCTTCTG GTTTGTTGGT 
ATTCACGGTC CTTCAATTGT CGAACCAGCA ATCGCTGCTA TCACTTATGC CAATATCGAT 
GTCAACTTGC ATCTTATCCA AGCTGGACAA CATGCAGATA AAGTTATCAC TTCTGGTACT 
CAAATGTTTA TTGCTACCAT GGGTGGAACA GGAGCTACAT TGATTGTTCC ATTCTTGTTC 
ATGTGGATTT GTAAATCAGA TCGTAACCGT GCCATCGGAC GTGCCTCAGT TGTTCCAACA 
TTCTTTGGGG TTAATGAGCC AATCTTATTT GGTGCACCAA TCGTATTGAA TCCGATTTTC 
TTTGTACCGT TCATTTTCAC TCCGATTGTC AACGTTTGGA TCTTTAAATT CTTTGTTGAC 
ACATTGAACA TGAACTCATT CTCTGCCAAC CTTCCATGGG TTACTCCTGG TCCGTTGGGA 
ATTGTACTCG GTACTAACTT CCAAGTTCTA TCATTTATCT TAGCCGGACT CTTGGTAGTT 
GTTGATACTA TCATTTATTA CCCATTTGTT AAGGTATACG ATGAACAAAT TCTTGAAGAA 
GAACGTTCTG GTAAAACAAA CGATGCTCTT AAAGAAAAAG TAGCTGAAAA CTTCAATACT 
GCTAAAGCAG ATGCCGTTCT TGGAAAAGCA GGCGTTGCTA AAGAAGATGT AGCAGCAAAC 
AATAATATCA CAAAAGAAAC TAATGTCCTT GTTCTTTGTG CAGGTGGAGG TACAAGTGGC 
TTGCTTGCCA ATGCCTTGAA CAAAGCAGCA GCAGAATACA ATGTTCCAGT CAAGGCGGCA 
GCGGGTGGTT ACGGTGCTCA CCGTGAAATG TTGCCAGAGT TTGACTTGGT AATCTTGGCT 
CCACAGGTCG CTTCAAACTT CGATGATATG AAGGCTGAAA CAGATAAATT GGGCATTAAA 
CTTGTAAAAA CTGAAGGAGC TCAATATATC AAATTGACAC GTGACGGAAA AGGTGCTCTT 
GCATTTGTTC AACAACAGTT TGATTAA 

 

Protein sequence

MHKLIELIEK GKPFFEKISR NIYLRAIRDG FIAGMPVILF SSIFILIAYV PNAWGFHWSK 
DIETFLMTPY SYSMGILAFF VGGTTAKALT DSKNRDLPAT NQINFLSTML ASMVGFLLMA 
AEPAKEGGFL TAFMGTKGLL TAFIAAFVTV NVYKVCVKNN VTIRMPEDVP PNISQVFKDL 
IPFTVSVVLL YGLELLVKGT LGVTVAESIG TLIAPLFSAA DGYLGITLIF GAYAFFWFVG 
IHGPSIVEPA IAAITYANID VNLHLIQAGQ HADKVITSGT QMFIATMGGT GATLIVPFLF 
MWICKSDRNR AIGRASVVPT FFGVNEPILF GAPIVLNPIF FVPFIFTPIV NVWIFKFFVD 
TLNMNSFSAN LPWVTPGPLG IVLGTNFQVL SFILAGLLVV VDTIIYYPFV KVYDEQILEE 
ERSGKTNDAL KEKVAENFNT AKADAVLGKA GVAKEDVAAN NNITKETNVL VLCAGGGTSG 
LLANALNKAA AEYNVPVKAA AGGYGAHREM LPEFDLVILA PQVASNFDDM KAETDKLGIK 
LVKTEGAQYI KLTRDGKGAL AFVQQQFD