| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_69560 |
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| Symbol | hcpB |
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| ID | 4385051 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008463 |
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| Strand | - |
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| Start bp | 6206092 |
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| End bp | 6206610 |
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| Gene Length | 519 bp |
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| Protein Length | 172 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639328207 |
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| Product | secreted protein Hcp |
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| Protein accession | YP_793741 |
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| Protein GI | 116053416 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
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| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.00260129 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAACAC CCGCCTATAT GTCCATCACC GGCACCAAGC AGGGCCTGAT CACCGCCGGC
GCCTTCACCG AGGATTCGGT CGGCAACACC TACCAGGAAG GCCACGAGGA CCAAGTGATG
GTCCAGGGCT TCAACCACGA AGTGATCATC CCGCGCGACC CGCAGTCCGG CCAGCCGACC
GGCCAGCGCG TGCACAAGCC GGTGGTCATC ACCAAGGTCT TCGACAAGGC CTCGCCGCTG
CTGCTGGCCG CCCTGACCTC CGGCGAGCGC CTGACCAAGG TCGAGATCCA GTGGTACCGC
ACCTCCGCCG CCGGCACCCA GGAGCACTAC TACACCACCG TCCTGGAAGA CGCGATCATC
GTCGACATCA AGGACTACAT GCACAACTGC CAGGACCCGG GCAACGCCCA CTTCACCCAC
CTGGAAGACG TGCACTTCAC CTACCGCAAG ATCACCTGGA CCCACGAAGT CTCCGGCACC
TCCGGCTCCG ACGACTGGCG CTCCCCGGTC GCCGGCTGA
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| Protein sequence | MATPAYMSIT GTKQGLITAG AFTEDSVGNT YQEGHEDQVM VQGFNHEVII PRDPQSGQPT
GQRVHKPVVI TKVFDKASPL LLAALTSGER LTKVEIQWYR TSAAGTQEHY YTTVLEDAII
VDIKDYMHNC QDPGNAHFTH LEDVHFTYRK ITWTHEVSGT SGSDDWRSPV AG
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