| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_66080 |
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| Symbol | msbA |
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| ID | 4385499 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008463 |
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| Strand | - |
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| Start bp | 5885130 |
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| End bp | 5886941 |
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| Gene Length | 1812 bp |
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| Protein Length | 603 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 639327930 |
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| Product | transport protein MsbA |
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| Protein accession | YP_793466 |
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| Protein GI | 116053145 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | 42 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 78 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGATA GTCCTCAGAA TCCCGGACCT TCCAGTCTCA AGATCTATTT CCGCCTGTTG
GGCTACGTGA AGCCCTACAT CGGAATGTTC CTACTCAGCA TCGTCGGTTT CCTGATCTTC
GCGTCGACCC AGCCGATGCT GGCGGGCATC CTCAAGTATT TCGTCGACGG CCTCTCCAAT
CCTGACGCGG CATTGTTTCC GAATGTGCAG TGGCCCTGGT TGCGCGACCT GCACCTGGTC
TACGCGGTGC CGTTGCTGAT CATCCTGATC GCTGCCTGGC AGGGGCTGGG CTCGTTCCTC
GGCAACTTCT TCCTGGCCAA GGTTTCCCTG GGGCTGGTGC ATGACCTGCG GGTCGCCCTG
TTCAACAAGC TGCTGGTGCT GCCGAACCGC TATTTCGACA CGCACAGCTC CGGCCACCTG
ATCTCGCGCA TCACCTTCAA CGTGACCATG GTCACCGGAG CAGCCACGGA TGCCATCAAG
GTGGTGATCC GTGAGGGCCT GACCGTGGTC TTCCTGTTCC TCTACCTGCT GTGGATGAAC
TGGAAGCTGA CCCTGGTGAT GCTGGCGATC CTGCCGGTCA TCGCGGTGAT GGTGACTACT
GCCAGCCGCA AGTTCCGCAA GCAGAGCAAG AAGATCCAGG TGGCCATGGG CGACGTCACC
CACGTCGCCT CGGAAACTAT CCAGGGCTAC CGGGTGGTGC GCAGCTTCGG CGGCGAAGCC
TATGAAGAGA AGCGCTTCCA CGACGCCAGC CAGAGCAATA CCGACAAGCA GTTGCGGATG
ACCAAGACCG GCGCGGTCTA CACGCCGATG CTGCAATTGG TGATCTACGT CGCCATGGCG
ATACTGATGT TCCTCGTGCT GTGGCTGCGC GGGGACGCCT CGGCCGGCGA CCTGGTGGCC
TATATCACCG CGGCGGGCCT TTTGCCCAAA CCGATCCGCC AGCTTTCCGA GGTCAGTTCC
ACGGTCCAGC GCGGCGTCGC CGGCGCCGAG AGCATCTTCG AGCAGCTCGA CGAAGCGGCG
GAGGAAGACC AGGGGAGCGT CGAGAAGGAG CGGGTCAGCG GGCGCCTGGA AGTGCGCAAC
CTGAGCTTCC GTTATCCCGG AACCGACAAG CAGGTGCTGG ATGACATCAG TTTCGTCGCC
GAACCCGGGC AGATGATCGC CCTGGTCGGC CGTTCCGGTA GCGGCAAGTC GACCCTGGCC
AACCTGGTTC CGCGCTTTTA TCAGCACAAT GACGGCAAGA TCATGCTTGA TGGCGTTGAG
GTCGAGGATT ATCGCCTGCG TAACCTGCGC CGCCACATCG CCCTGGTGAC CCAGCAGGTC
ACGCTGTTCA ACGACAGCGT GGCCAACAAC ATCGCCTACG GCGACCTGGC TGGCGCGCCG
CGCGAGGAAA TCGAGCGGGC GGCGAAGGCT GCCAACGCCA AGGAATTCAT CGACAACCTG
CCGCAAGGCT TCGACACCGA GGTCGGCGAG AATGGCGTGC TGCTTTCCGG CGGCCAGCGC
CAGCGTCTGG CGATCGCCCG GGCGCTGCTC AAGGACGCGC CCCTGCTGAT CCTCGACGAG
GCGACCTCGG CGCTGGACAC CGAGTCGGAG CGGCATATTC AGGCGGCGCT GGACGAAGTG
ATGAAAGGGC GCACCACCCT GGTGATCGCC CACCGCCTGT CGACCATCGA GAAGGCCGAC
CTGATCCTGG TGATGGACCA GGGGCAGATC GTCGAGCGCG GCAGCCACGC CGAGCTGCTG
GCGCAGAACG GCCACTATGC GCGGCTGCAC GCGATGGGAC TGGATGAGCA GGCGCCGGCG
CCTGTCGGCT GA
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| Protein sequence | MSDSPQNPGP SSLKIYFRLL GYVKPYIGMF LLSIVGFLIF ASTQPMLAGI LKYFVDGLSN
PDAALFPNVQ WPWLRDLHLV YAVPLLIILI AAWQGLGSFL GNFFLAKVSL GLVHDLRVAL
FNKLLVLPNR YFDTHSSGHL ISRITFNVTM VTGAATDAIK VVIREGLTVV FLFLYLLWMN
WKLTLVMLAI LPVIAVMVTT ASRKFRKQSK KIQVAMGDVT HVASETIQGY RVVRSFGGEA
YEEKRFHDAS QSNTDKQLRM TKTGAVYTPM LQLVIYVAMA ILMFLVLWLR GDASAGDLVA
YITAAGLLPK PIRQLSEVSS TVQRGVAGAE SIFEQLDEAA EEDQGSVEKE RVSGRLEVRN
LSFRYPGTDK QVLDDISFVA EPGQMIALVG RSGSGKSTLA NLVPRFYQHN DGKIMLDGVE
VEDYRLRNLR RHIALVTQQV TLFNDSVANN IAYGDLAGAP REEIERAAKA ANAKEFIDNL
PQGFDTEVGE NGVLLSGGQR QRLAIARALL KDAPLLILDE ATSALDTESE RHIQAALDEV
MKGRTTLVIA HRLSTIEKAD LILVMDQGQI VERGSHAELL AQNGHYARLH AMGLDEQAPA
PVG
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