Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PA14_65370 |
Symbol | amiB |
ID | 4384850 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
Kingdom | Bacteria |
Replicon accession | NC_008463 |
Strand | - |
Start bp | 5823071 |
End bp | 5824498 |
Gene Length | 1428 bp |
Protein Length | 475 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 639327879 |
Product | N-acetylmuramoyl-L-alanine amidase |
Protein accession | YP_793415 |
Protein GI | 116053096 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.0527105 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 75 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGTTGGG GCTTGCGTCT GCGGACGTTG TTGACTGGGG TGATGATTCT GCTGGCCTGC CAGGTCGGCG AGGTTCTGGC CGCCGCGCAA ATCAAGAGCG TGCGGATCTG GCGCGCTCCG GACAACACCC GTCTGGTCTT CGATCTCTCC GGTCCGGTGC AGCACAGCCT GTTCACCCTG GCCGCACCCA ACCGTATCGT CATCGACGTC AGCGGCGCCC AGCTGGCGAC CCAGCTCAAC GGTCTCAAGC TCGGCAACAC CCCGATCACC GCGGTGCGCT CCGCCCAGCG CACGCCCAAC GACCTGCGCA TGGTCCTCGA CCTGTCGGCG CAGGTCACCC CGAAAAGCTT CGTCCTGCCG CCCAACCAGC AATACGGCAA CCGCCTGGTG GTCGATCTCT ACGACCAGGG CGCCGACCTG ACCCCGGACG TACCCGCGAC GCCGACCCCG AGCGTGCCGG TCACTCCGGT GACGCCGACC CAGCCGGTGG CCAAGCTGCC GCTGCCGACC AAGGGCGGTA CCCGCGATAT CGTCATCGCC ATCGACGCCG GCCACGGCGG TGAAGACCCT GGCGCCCTTG GCCCGGGCGG GCTGCACGAG AAGAACATCA CCCTGTCGAT CGCTCGCGAG CTGCAACGCC AGATCAACCA GGTGCGCGGT TACCGGGCCG AGCTGACCCG TACCGGCGAC TACTTCATCC CACTGCGCAA GCGCACCGAG ATCGCCCGCA AGAAGGGCGC CGACCTGTTC GTCTCGATCC ATGCCGACGC CGCGCCGAGC CGCAGCGCCT TCGGTGCCTC GGTGTTCGCC CTGTCCGACC GCGGCGCCAC TTCGGAAACC GCGCGCTGGC TGGCCGACAG CGAGAACCGT TCCGACCTGA TCGGCGGCGA TGGCAGCGTC AGCCTCGGCG ACAAGGACCA GATGCTCGCC GGCGTGCTGC TCGACCTGTC GATGACCGCC ACCCTCTCGT CGAGCCTGGA CGTCGGCCAC AAGGTGCTGA CCAATGTCGG CCGCATCACT TCGCTGCACA AGCGTCGTGT CGAGCAGGCC GGGTTCATGG TGTTGAAGTC GCCGGACATC CCGTCGATCC TGGTGGAAAC CGGCTTCATC TCGAACGTCA ACGAGTCGCG CAAGCTGGCC AGCGCCAGCC ATCAGCAGGC CTTGGCGCGT TCGATCACCA GCGGCATCCG CCAGTATTTC CAGCAGAGCC CGCCGCCCGG CACCTACATC GCCTCTTTGC GCGCCCAGGG CAAGCTCTCC ATGGGGCCGC GCGAGCACGT GGTGCGGCCC GGAGAGACCC TGGCGATGAT CGCCCAGCGC TATGAAGTGA GCATGGCCGC GCTGCGCAGC AGCAACAGCC TGCCCAGCGA CAACCTGAAA GTCGGCCAGG CCCTGTCCAT CCCGAGCACC GCCCTGGCGG CCCAGTGA
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Protein sequence | MGWGLRLRTL LTGVMILLAC QVGEVLAAAQ IKSVRIWRAP DNTRLVFDLS GPVQHSLFTL AAPNRIVIDV SGAQLATQLN GLKLGNTPIT AVRSAQRTPN DLRMVLDLSA QVTPKSFVLP PNQQYGNRLV VDLYDQGADL TPDVPATPTP SVPVTPVTPT QPVAKLPLPT KGGTRDIVIA IDAGHGGEDP GALGPGGLHE KNITLSIARE LQRQINQVRG YRAELTRTGD YFIPLRKRTE IARKKGADLF VSIHADAAPS RSAFGASVFA LSDRGATSET ARWLADSENR SDLIGGDGSV SLGDKDQMLA GVLLDLSMTA TLSSSLDVGH KVLTNVGRIT SLHKRRVEQA GFMVLKSPDI PSILVETGFI SNVNESRKLA SASHQQALAR SITSGIRQYF QQSPPPGTYI ASLRAQGKLS MGPREHVVRP GETLAMIAQR YEVSMAALRS SNSLPSDNLK VGQALSIPST ALAAQ
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