| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_64280 |
|---|
| Symbol | |
|---|
| ID | 4383329 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | + |
|---|
| Start bp | 5728528 |
|---|
| End bp | 5730117 |
|---|
| Gene Length | 1590 bp |
|---|
| Protein Length | 529 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639327788 |
|---|
| Product | putative branched-chain amino acid ABC transporter, permease protein |
|---|
| Protein accession | YP_793326 |
|---|
| Protein GI | 116053008 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
|---|
| TIGRFAM ID | [TIGR03409] urea ABC transporter, permease protein UrtB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.00501395 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 68 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCTTG CCCTCCTCAC CCGCCCGCTC CAGGCCTGTG TCCTGGTCCT GGCCGCCCTT
CTCGCGGTGG CGGCCCACGC CGGACCGGCG CAGGACTTCG CCGCTGCCGA CAACGGCGGT
CGCGCCCACC TGCTCGAACA CTGGGCGGCG ACGCCCGACG CCGATCGCCT GGCCTTTCTC
GAAGCGCTGC GCCACAACCG CATTGCGCTG GACAGCCGCC AGCAGCCATT CCTCCTCGGC
GCCGACCAGC GTTTCCAGGC CGCCGAAGGC GACGCCCTGC CGGACGGCGA GCCGAAGCCG
CTGCGCCTGA ACAATCGCCT GCGCGGCCTG CTCAACACCG CCCTGGCCAG CCACCAGTTG
GTGGCCAACG AAGTGCCGCT GCGGCAGGCC GCCGCGCAGC AGTTGCAGAA AACCGCCAAG
GCCGCGCAAC GGCCGCTGCT CGAAGCGCGC CTGCGGATCG AGAGCGACGC TGGCGTGAAG
GAAGCCCTCG GCCTGGCCCT GGCCAACCTG CAACTCGGCG ATCCCGACCC GGCGCTACGC
CTTTCCGCCG TGCGCCTGCT CGGCGAGTCC GGCGATCCGC TGGCGCGAAC CCGCCTGGAG
AACCTGCTCG ACCCGGCGGT GGAACCGGAG GAAGGCGTGC GCATCGCTGC CGCCACCAGC
CTGGCCCAGG TCAAGCGCCG GCTGCTGGTC GGCGACCTGC TCGGCCAGGC CTTCAGCGGC
CTGTCGCTGG GCTCGATCCT GCTGCTCGCG GCGCTCGGCC TGGCGATCAC CTACGGCCTG
CTCGGGGTGA TCAACATGGC CCACGGCGAA ATGCTCATGC TCGGCGCCTA CTCCACCTAC
GTGGTGCAAC TGCTGTTCCA GCGCCTGGCG CCGGAATGGC TGGCGCTCTA CCCGTTGCTG
GCGCTACCGG TGGCGTTCTG CGTCAGCGCC GCCATCGGCA TGGCCCTGGA GCGCACGGTG
ATCCGCCATC TCTACGGCCG GCCGCTGGAA ACCCTGCTCG CCACCTGGGG CATCAGCCTG
GTGCTGATCC AACTGGTGCG GATGCTGTTC GGCGCACAGA ACGTCGAGGT AGCCAACCCG
GCCTGGCTGT CCGGCGGCAT CCAGGTGCTG CCGAACCTGG TGCTGCCGTG GAACCGCATC
GTCATCATCG GCTTCGCCCT GTTCGTGCTG CTCCTCACCT GGCTGCTGCT GAACCGCACG
CGGCTCGGCC TGAACGTCCG CGCGGTGACC CAGAACCGCA ACATGGCGGC CTGCTGCGGG
GTGCCCACAG GGCGCGTGGA CATGCTCGCC TTCGGTCTCG GCTCGGGCAT CGCCGGGCTC
GGCGGGGTAG CCCTGTCGCA GGTCGGCAAC GTCGGCCCGG ACCTCGGCCA GGGCTACATC
ATCGACTCCT TCCTGGTGGT GGTGCTCGGC GGCGTCGGCC AGCTCGCCGG CAGCGTCCTC
GCCGCCTTCG GCCTCGGCGT GGCGAACAAG ATCCTCGAAC CGCAGATCGG CGCGGTGCTG
GGCAAGATCC TGATCCTCGC GCTGATCGTC CTGTTCATCC AGAAACGCCC GCAGGGACTG
TTCGCCCTGA AAGGGAGGGT CATCGATTGA
|
|---|
| Protein sequence | MPLALLTRPL QACVLVLAAL LAVAAHAGPA QDFAAADNGG RAHLLEHWAA TPDADRLAFL
EALRHNRIAL DSRQQPFLLG ADQRFQAAEG DALPDGEPKP LRLNNRLRGL LNTALASHQL
VANEVPLRQA AAQQLQKTAK AAQRPLLEAR LRIESDAGVK EALGLALANL QLGDPDPALR
LSAVRLLGES GDPLARTRLE NLLDPAVEPE EGVRIAAATS LAQVKRRLLV GDLLGQAFSG
LSLGSILLLA ALGLAITYGL LGVINMAHGE MLMLGAYSTY VVQLLFQRLA PEWLALYPLL
ALPVAFCVSA AIGMALERTV IRHLYGRPLE TLLATWGISL VLIQLVRMLF GAQNVEVANP
AWLSGGIQVL PNLVLPWNRI VIIGFALFVL LLTWLLLNRT RLGLNVRAVT QNRNMAACCG
VPTGRVDMLA FGLGSGIAGL GGVALSQVGN VGPDLGQGYI IDSFLVVVLG GVGQLAGSVL
AAFGLGVANK ILEPQIGAVL GKILILALIV LFIQKRPQGL FALKGRVID
|
|---|
| |