| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_63730 |
|---|
| Symbol | |
|---|
| ID | 4383289 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | + |
|---|
| Start bp | 5681516 |
|---|
| End bp | 5682877 |
|---|
| Gene Length | 1362 bp |
|---|
| Protein Length | 453 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 639327748 |
|---|
| Product | putative transporter |
|---|
| Protein accession | YP_793286 |
|---|
| Protein GI | 116052968 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.0352676 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 57 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTGT TGCGCGATGC CTGGCGCCAC GCCCCGACCC ACCACAGGGT CTGGGCGCTG
GCCGGGCCGA TGATTCTGTC GAACGTTTCC GTTCCCCTGG TGCACCTGGT GGACAGCACG
GTGGTCGGCC ACCTGCCGCA CGCCTACCAG CTCGGCGCGG TAGCCGTGGG CGGCAGCCTC
TACACCCTGA TGGTCGGCGT GCTCGGCTTC CTGCGCATGG GCACCACCGG CTTCGCCGCC
CAGGCCGCCG GCCGCGATGA TGGCGGCGCG CTGCGCCTGA TCCTCGCCCA GGGCCTGGGC
ATGGCGCTGC TCCTGGCCCT GCTGCTCGGC GCGCTGGCCC TGCCCCTGAG CGGCTGGGCC
CTGCAACTGA TGCAACCGTC GGCGGAACTG ACCGGCGAGG CCCGCGCCTT CTTCCATACC
CGCCTGCTCG GCCTGCCGGC GGCCCTGGCC AGCTACGCAC TGGTCGGCTG GTTCCTCGGC
ACGCAGAACG CACGGGCGCC ATTGGCGATC CTGTTGACCA CCAACCTGAG CAACATCGCC
CTGGTGCTCT GGTTCGTCCA CGGCCTCGAC TGGGGCGTGC AAGGCGCGGC CCGCGCCTCG
GTGCTGGCGG AATGGAGCGG CGCCCTGCTC GGCCTGGCCC TGACCCGACG CGACCTGGCC
CGGCGCCCCG GGCGGGCGCA GTGGCAACGC CTGCGCCACT GGCTGTCCTG GCTGCCGCTG
CTGATGGTCA ACCGGGATAT CTTCATCCGC AGCCTGGCCC TGCAACTGGT GTTCTTCCTG
CTCACCGTAC AGGGCACCCG CCTCGGCGAC GCCACGGTAG CCGCCAACGC CCTGCTGCTC
AACGGCCTGC TCCTGACGTC CTACGCCCTC GACGGTCTCG CCCACGCGGT GGAGGCGCTC
TGCGGCCACG CCATCGGCGC CCGCGACCGA ACTGCCCTGC GCCGCGCGCT GGTGGTGGCC
GGTGGTTGGT CGCTGCTGGC AAGCCTGGCG TTCGCCGCGC TGTTCGCTCT GTTCGGCCAC
CTGTTCATCG ACCTGCAGAG CGACATCGCC GGCGTCCGCG AAGTCGCCTA CGCCTATCTG
CCGTACCTGG CCTGCCTGCC GCTGCTGGGG ATGTGGAGCT ATCTGCTCGA CGGCCTGTTC
ATCGGCGCCA CCCGCGCCCG CGAGATGCGT AACGCGATGC TCGTCGCGGT GGCCGCCAGC
CTGCCCCTCG GCTGGCTGTT GCAGGGGCTG GGCAACCACG GGCTATGGCT GGCGTTCCTC
GCCTTCATGC TGCTGCGCGG GCTGGTCCTG GCCGCCTACG GCTGGCGCCT GACCCGCCGC
GATGGCTGGT TCGCCGCTCA GGGCGCCGAC AGCGGGCGAT AG
|
|---|
| Protein sequence | MSLLRDAWRH APTHHRVWAL AGPMILSNVS VPLVHLVDST VVGHLPHAYQ LGAVAVGGSL
YTLMVGVLGF LRMGTTGFAA QAAGRDDGGA LRLILAQGLG MALLLALLLG ALALPLSGWA
LQLMQPSAEL TGEARAFFHT RLLGLPAALA SYALVGWFLG TQNARAPLAI LLTTNLSNIA
LVLWFVHGLD WGVQGAARAS VLAEWSGALL GLALTRRDLA RRPGRAQWQR LRHWLSWLPL
LMVNRDIFIR SLALQLVFFL LTVQGTRLGD ATVAANALLL NGLLLTSYAL DGLAHAVEAL
CGHAIGARDR TALRRALVVA GGWSLLASLA FAALFALFGH LFIDLQSDIA GVREVAYAYL
PYLACLPLLG MWSYLLDGLF IGATRAREMR NAMLVAVAAS LPLGWLLQGL GNHGLWLAFL
AFMLLRGLVL AAYGWRLTRR DGWFAAQGAD SGR
|
|---|
| |