Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PA14_62530 |
Symbol | cbrA |
ID | 4383174 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
Kingdom | Bacteria |
Replicon accession | NC_008463 |
Strand | + |
Start bp | 5575942 |
End bp | 5578893 |
Gene Length | 2952 bp |
Protein Length | 983 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 639327648 |
Product | two-component sensor CbrA |
Protein accession | YP_793189 |
Protein GI | 116052872 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only [T] Signal transduction mechanisms |
COG ID | [COG0591] Na+/proline symporter [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 56 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGACGA GCTTTAGCCT GACCCAGCTG ATCCTGATCA GCGTCGCCTA CCTCTCCACC CTCTTCGGCA TCGCCTGGAT CACCGAGCGC GGCTACGTGC CGCGCCGGCT GGTACGCCAC CCGCTGGTCT ACACCCTGTC GTTGGGCGTC TACGCCAGTG CCTGGGCGTT CTACGGCACG GTAGGCCTGG CCTACCAGTA CGGCTACGGG TTCCTCGCCA TCTACCTGGG GATTTCCGGG GCCTTCCTGC TCGCCCCGGT GCTGCTCTAT CCGATCCTGC GGGTGACACG CGCCTACCAG CTGTCCTCGC TGGCCGACCT CTTCGCCTTC CGTTTCCGCA GTACCTGGGC CGGCGCCCTG ACCACGCTGT TCATGCTGAT CGGCGTGCTG CCGATGCTGG CCCTGCAGAT CCAGGCGGTC ACCGACTCGA TCAGCATCCT CACCCGCGAC CCGGCCCAGG AGCGGGTCGC GTTCGTCTTC TGCACCCTGA TCACCCTGTT CGCGATCCTC TTCGGCGCTC GCCACATCGC CACCCGCGAA CGCCACGAGG GACTGGTGTT CGCCATCGCC TTCGAGTCGC TGGTCAAGCT GGTGATGCTC GGCAGTATCG GCCTCTACGC CCTGTACGGC GTCTTCGGCG GGCCGGAAGG CCTGGAAGTC TGGCTGCTGC AGAACCAGAC CGCGCTGACC ACCCTGCACA CGCCGCTGGC CGAGGGTCCA TGGCGAACGC TGCTGCTGGT GTTCTTCGCC GCGGCCATCG TGATGCCGCA CATGTTCCAC ATGATCTTCA CCGAGAACCT CAACCCGCGC GCGCTGATTT CCGCCAGCTG GGGCCTGCCG CTGTTCCTGC TGCTGATGAG CCTTGCGGTA CCGCCGATCC TCTGGGCCGG GCTGCGCCTC GGCGCCTCGA CCACACCGGA GTACTACACC ATCGGCCTCG GCCTGGCGGT GGACAGCCCG GCCCTGGCCC TGGCCGCCTT CATCGGCGGC ATCTCCGCCG CCAGCGGGCT GACTATCGTG ATGACCCTGG CGCTCTCGGG AATGGTCCTC AACCACCTGG TGCTGCCGCT CTACCAGCCG CCGGCGCAGG GCAACATCTA CCGCTGGCTG AAATGGACCC GGCGCCTGCT GATCGTCGCC ATCATCATGG CCAGCTACGC CTTCTACCTG CTGCTGGGCG CCGAACAGGA CCTCTCCAAC CTGGGCATAG TGTCCTTCGT CGCCACCCTG CAATTCCTTC CCGGCGCCCT CTCGGTGCTG TACTGGCCGA CCGCCAACCG CCGCGGCTTC ATCTCCGGGC TGATCGCCGG CATGCTGGTC TGGGCGATCA CCATGCTGCT GCCCCTGATG GGGAACGTAC AGGGCCTGTA CCTGCCGCTG TTCGACGTGA TCTACGTGCT GGACGACTCC AACTGGCACC TGGCGGCGCT GTCCTCGCTG GCGGCCAACG TGCTGGTATT CACCCTGGTC TCGCTGTTCA CCGAGGCCAG CGACGAGGAA AAAGGCGCCG CCGAGGCCTG CGCGGTGGAC AACGTACGCC GTCCGCAACG CCGCGAACTG TTCGCCGGCT CGCCGCAGGA GTTCGCCAGC CAGCTGGCCA AGCCGCTGGG CGCCAAGACC GCGCAGAAGG AGGTCGAGCA GGCCCTGCGC GATCTCCACC TGCCCTTCGA CGAACGTCGC CCCTATGCCC TGCGTCGCTT GCGCGACCGT ATCGAGGCGA ACCTTTCCGG GCTGATGGGT CCCAGTGTCG CCCAGGACAT CGTGGAGACC TTCCTTCCCT ACAAGACCAG CGAAGAAAGC TATGTCACCG AGGACATCCA CTTCATCGAG AGCCGCCTGG AGGACTATCA CTCCCGGCTG ACCGGCCTCG CCGCCGAACT CGACACCCTG CGCCGCTACC ACCGGCAGAC CCTGCAAGAC CTGCCGATGG GCGTCTGCTC CCTGGCCAAG GACCAGGAAG TGCTGATGTG GAACCGCGCC ATCGAGGAAC TCACCGGGGT CGGCGCGCAG AAGGTCGTCG GTTCGCGCCT GTCGGCCTTG CCCGAACCCT GGAAGGGCCT GCTGGAACGT TTCATCGACG CCCCCGACGA GCACCTGCAC AAGCAGCGCC TGGTCTACGA CGGCCACACC CGCTGGCTGA ACCTGCACAA GGCGGCCATC GAGGAACCCC TGGCGCCGGG TAACAGCGGC CTGGTGCTAC TGGTGGAAGA CCTCACCGAA ACCCAACTGC TGGAAGACAA GCTGGTCCAC TCCGAACGCC TGGCTTCCAT CGGCCGCCTT GCCGCCGGGG TAGCCCACGA GATCGGCAAT CCGATCACCG GCATCGCCTG CCTGGCGCAG AACCTGCGCG AGGAGCGCGA AGGCGACGGC GAGCTGACCG AGATTAGCGA GCAGATCCTC GACCAGACCA AGCGCGTATC GCGCATCGTC CAGTCGTTGA TGAGCTTCGC CCACTCCGGT AGCCACCTGC AGGCCCTGGA ACCGGTGTGC CTGAGCGAAG TCGCCCAGGA GGCCATCGGA CTGCTGTCGC TGAACCGGCG TAGCGTCGAA GTAGAGTTCT TCAACCTCTG CGATCCGGCG CACTGGGTCG AGGGCGACTC GCAGCGCCTG GCCCAGGTGC TGATCAACCT GCTCTCCAAT GCTCGCGACG CCAGCCCGCC GGGCGGCGCG ATCCGGGTCC GCAGCGAAGC CTCGGAACAT ACCGTGGACC TGGTCGTCGA GGACGAGGGC AGCGGCATCC CGAAGGCGAT CATGGACCAG TTGTTCGAAC CGTTCTTCAC CACCAAGGAC CCCGGTAAGG GGACCGGGCT CGGCCTCGCA CTGGTCTATT CGATCGTGGA AGAGCATTAT GGACAGATAA CCATCGAGAG CCCGACGGAT CACCAGCGAG AAGGCGGCAC CCGCTTCCGC GTGACCCTGC CGCGGCACCC TGGCCCGACG GCCGAGCTGT AG
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Protein sequence | MLTSFSLTQL ILISVAYLST LFGIAWITER GYVPRRLVRH PLVYTLSLGV YASAWAFYGT VGLAYQYGYG FLAIYLGISG AFLLAPVLLY PILRVTRAYQ LSSLADLFAF RFRSTWAGAL TTLFMLIGVL PMLALQIQAV TDSISILTRD PAQERVAFVF CTLITLFAIL FGARHIATRE RHEGLVFAIA FESLVKLVML GSIGLYALYG VFGGPEGLEV WLLQNQTALT TLHTPLAEGP WRTLLLVFFA AAIVMPHMFH MIFTENLNPR ALISASWGLP LFLLLMSLAV PPILWAGLRL GASTTPEYYT IGLGLAVDSP ALALAAFIGG ISAASGLTIV MTLALSGMVL NHLVLPLYQP PAQGNIYRWL KWTRRLLIVA IIMASYAFYL LLGAEQDLSN LGIVSFVATL QFLPGALSVL YWPTANRRGF ISGLIAGMLV WAITMLLPLM GNVQGLYLPL FDVIYVLDDS NWHLAALSSL AANVLVFTLV SLFTEASDEE KGAAEACAVD NVRRPQRREL FAGSPQEFAS QLAKPLGAKT AQKEVEQALR DLHLPFDERR PYALRRLRDR IEANLSGLMG PSVAQDIVET FLPYKTSEES YVTEDIHFIE SRLEDYHSRL TGLAAELDTL RRYHRQTLQD LPMGVCSLAK DQEVLMWNRA IEELTGVGAQ KVVGSRLSAL PEPWKGLLER FIDAPDEHLH KQRLVYDGHT RWLNLHKAAI EEPLAPGNSG LVLLVEDLTE TQLLEDKLVH SERLASIGRL AAGVAHEIGN PITGIACLAQ NLREEREGDG ELTEISEQIL DQTKRVSRIV QSLMSFAHSG SHLQALEPVC LSEVAQEAIG LLSLNRRSVE VEFFNLCDPA HWVEGDSQRL AQVLINLLSN ARDASPPGGA IRVRSEASEH TVDLVVEDEG SGIPKAIMDQ LFEPFFTTKD PGKGTGLGLA LVYSIVEEHY GQITIESPTD HQREGGTRFR VTLPRHPGPT AEL
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