| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_60830 |
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| Symbol | mexD |
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| ID | 4384572 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008463 |
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| Strand | - |
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| Start bp | 5423547 |
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| End bp | 5426678 |
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| Gene Length | 3132 bp |
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| Protein Length | 1043 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639327509 |
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| Product | multidrug efflux RND transporter MexD |
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| Protein accession | YP_793057 |
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| Protein GI | 116052740 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.503401 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 62 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGAAT TCTTCATCAA GCGGCCGAAC TTCGCCTGGG TGGTGGCCCT GTTCATCTCC
CTGGCCGGCC TGCTGGTCAT TTCCAAATTG CCGGTAGCGC AGTACCCCAA TGTCGCGCCG
CCACAGATCA CCATCACCGC CACCTATCCC GGCGCCTCGG CGAAGGTGCT GGTGGACTCC
GTCACCAGTG TGCTCGAGGA GTCGCTGAAC GGCGCCAAGG GCCTGCTCTA CTTCGAGTCG
ACCAACAACT CCAACGGCAG CGCCGAGATC GTCGTCACCT TCGAGCCGGG CACCGATCCG
GACCTGGCCC AGGTGGACGT GCAGAACCGC CTGAAGAAAG CCGAGGCGCG CATGCCGCAG
GCGGTGCTGA CCCAGGGCCT GCAGGTCGAG CAGACCAGCG CCGGTTTCCT GCTGATCTAT
GCGCTCAGCT ACAAGGAAGG CGCTCAGCGC AGCGACACCA CCACCCTCGG CGACTATGCC
GCGCGCAATA TCAACAACGA GCTGCGGCGC CTGCCGGGCG TCGGCAAGCT GCAATTCTTC
TCTTCCGAGG CGGCCATGCG GGTCTGGATC GATCCGCAGA AGCTGGTGGG CTTCGGCCTC
TCCATCGACG ACGTGAGCAA TGCCATCCGC GGGCAGAACG TGCAGGTGCC GGCCGGCGCC
TTCGGCAGCG CGCCGGGCAG TTCCGCGCAG GAGCTGACGG CGACCCTGGC GGTGAAGGGC
ACCCTGGACG ATCCGCAGGA GTTCGGCCAG GTGGTGCTGC GCGCCAACCA GGACGGCTCG
CTGGTCCGGC TCGCCGATGT CGCGCGCCTG GAACTCGGCA AGGAGAGCTA CAACATCTCC
TCGCGGCTGA ACGGCACGCC CACCGTGGGC GGGGCGATCC AGCTGTCGCC CGGGGCCAAC
GCGATCCAGA CCGCTACCCT GGTGAAACAG CGTCTCGCCG AACTGTCGGC GTTCTTCCCC
GAGGACATGC AGTACAGCGT GCCCTACGAC ACTTCGCGCT TCGTCGACGT GGCCATCGAG
AAGGTGATCC ACACCCTGAT CGAAGCGATG GTCCTGGTGT TCCTGGTGAT GTTCCTGTTC
CTGCAGAACG TCCGCTACAC CCTGATCCCG TCCATCGTGG TGCCGGTGTG CCTGCTGGGT
ACGCTGATGG TGATGTACCT GCTGGGGTTC TCGGTGAACA TGATGACCAT GTTCGGCATG
GTCCTGGCGA TCGGCATCCT GGTGGACGAC GCCATCGTGG TGGTGGAGAA CGTCGAGCGG
ATCATGGCGG AGGAGGGGAT TTCCCCGGCC GAGGCCACGG TCAAGGCGAT GAAGCAGGTG
TCCGGCGCCA TCGTCGGCAT CACCCTGGTG CTCTCGGCGG TGTTCCTGCC GCTGGCTTTC
ATGGCCGGTT CGGTGGGGGT GATCTACCAG CAGTTCTCGG TGTCGCTGGC GGTCTCGATC
CTGTTCTCCG GCTTCCTCGC CCTGACCTTC ACCCCGGCGC TGTGCGCCAC GCTGCTCAAG
CCCATTCCCG AAGGGCACCA CGAGAAGCGC GGCTTCTTCG GCGCCTTCAA CCGTGGCTTC
GCCCGCGTCA CCGAGCGCTA TTCGCTGCTC AACTCGAAGC TGGTGGCGCG CGCCGGACGC
TTCATGCTGG TGTACGCCGG CCTGGTGGCC ATGCTTGGCT ACTTCTACCT GCGCCTGCCG
GAAGCCTTCG TGCCGGCGGA AGACCTCGGC TACATGGTGG TCGACGTGCA ACTGCCGCCT
GGCGCTTCGC GCGTGCGCAC CGATGCCACC GGCGAGGAAC TCGAGCGCTT CCTCAAGTCC
CGCGAGGCGG TGGCTTCGGT GTTCCTGATC TCGGGCTTCA GCTTCTCCGG CCAGGGCGAC
AATGCCGCGC TGGCCTTCCC GACCTTCAAG GACTGGTCCG AGCGAGGCGC CGAGCAGTCG
GCCGCCGCCG AGATCGCCGC GCTGAACGAG CATTTCGCGC TGCCCGACGA CGGCACCATC
ATGGCCGTGT CGCCGCCACC GATCGACGGC CTGGGCAACT CCGGCGGTTT CGCCCTACGC
CTGATGGACC GCGGTGGCGT CGGCCGCGAG GCCTTGTTGC AGGCCCGCGA TACCTTGCTC
GGCGAGGTCC AGACCAACCC GAAATTCCTC TACGCGATGA TGGAAGGCCT GGCCGAAGCG
CCGCAACTGC GCCTGTTGAT CGACCGGGAG AAGGCCCGCG CCCTGGGGGT GAGCTTCGAG
ACCATCAGCG GCACGCTGTC CGCCGCCTTC GGCTCGGAGG TGATCAATGA CTTCACCAAT
GCGGGGCGCC AACAGCGGGT GGTGATCCAG GCCGAACAGG GCAACCGGAT GACCCCGGAA
AGCGTGCTCG AGCTATACGT GCCTAACGCT GCTGGCAACC TGGTACCGCT CAGCGCCTTC
GTCAGCGTGA AATGGGAAGA GGGACCGGTG CAATTGGTGC GCTACAACGG CTACCCGTCG
ATCCGCATCG TCGGTGACGC CGCGCCCGGC TTCAGCACCG GCGAAGCCAT GGCGGAAATG
GAGCGCCTGG CCGCGCAACT GCCGGCCGGC ATCGGCTACG AGTGGACCGG CCTGTCCTAT
CAGGAGAAGG TCTCCGCCGG GCAGGCCACC AGCCTGTTCG CCCTCGCCAT CCTGGTGGTC
TTCCTGTTGC TGGTGGCGCT CTACGAGAGC TGGTCGATCC CGCTGTCGGT GATGCTGATC
GTGCCGATCG GCGCCATCGG CGCGGTGCTC GCGGTAATGG TCGCGGGTAT GTCCAACGAC
GTGTATTTCA AGGTCGGCCT GATCACCATC ATCGGTCTTT CGGCGAAGAA CGCGATCCTC
ATCGTCGAGT TCGCCAAGGA ACTCTGGGAG CAGGGGCACA GCCTGCGCGA CGCCGCCATC
GAGGCCGCGC GCCTGCGCTT CCGACCGATC ATCATGACTT CCATGGCGTT CATCCTCGGC
GTGGTACCCC TGGCCCTGGC CAGCGGCGCC GGCGCGGCGA GCCAGCGCGC CATCGGCACC
GGAGTGATCG GCGGGATGCT CAGCGCCACG TTCCTCGGCG TGCTGTTCGT ACCCATCTGT
TTCGTCTGGC TGCTGTCGCT GCTGCGCAGC AGGCCGGCGC CCATCGAACA GGCCGCTACG
GCCGGGGAGT GA
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| Protein sequence | MSEFFIKRPN FAWVVALFIS LAGLLVISKL PVAQYPNVAP PQITITATYP GASAKVLVDS
VTSVLEESLN GAKGLLYFES TNNSNGSAEI VVTFEPGTDP DLAQVDVQNR LKKAEARMPQ
AVLTQGLQVE QTSAGFLLIY ALSYKEGAQR SDTTTLGDYA ARNINNELRR LPGVGKLQFF
SSEAAMRVWI DPQKLVGFGL SIDDVSNAIR GQNVQVPAGA FGSAPGSSAQ ELTATLAVKG
TLDDPQEFGQ VVLRANQDGS LVRLADVARL ELGKESYNIS SRLNGTPTVG GAIQLSPGAN
AIQTATLVKQ RLAELSAFFP EDMQYSVPYD TSRFVDVAIE KVIHTLIEAM VLVFLVMFLF
LQNVRYTLIP SIVVPVCLLG TLMVMYLLGF SVNMMTMFGM VLAIGILVDD AIVVVENVER
IMAEEGISPA EATVKAMKQV SGAIVGITLV LSAVFLPLAF MAGSVGVIYQ QFSVSLAVSI
LFSGFLALTF TPALCATLLK PIPEGHHEKR GFFGAFNRGF ARVTERYSLL NSKLVARAGR
FMLVYAGLVA MLGYFYLRLP EAFVPAEDLG YMVVDVQLPP GASRVRTDAT GEELERFLKS
REAVASVFLI SGFSFSGQGD NAALAFPTFK DWSERGAEQS AAAEIAALNE HFALPDDGTI
MAVSPPPIDG LGNSGGFALR LMDRGGVGRE ALLQARDTLL GEVQTNPKFL YAMMEGLAEA
PQLRLLIDRE KARALGVSFE TISGTLSAAF GSEVINDFTN AGRQQRVVIQ AEQGNRMTPE
SVLELYVPNA AGNLVPLSAF VSVKWEEGPV QLVRYNGYPS IRIVGDAAPG FSTGEAMAEM
ERLAAQLPAG IGYEWTGLSY QEKVSAGQAT SLFALAILVV FLLLVALYES WSIPLSVMLI
VPIGAIGAVL AVMVAGMSND VYFKVGLITI IGLSAKNAIL IVEFAKELWE QGHSLRDAAI
EAARLRFRPI IMTSMAFILG VVPLALASGA GAASQRAIGT GVIGGMLSAT FLGVLFVPIC
FVWLLSLLRS RPAPIEQAAT AGE
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