| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_60600 |
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| Symbol | rtcR |
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| ID | 4385713 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008463 |
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| Strand | - |
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| Start bp | 5401640 |
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| End bp | 5403235 |
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| Gene Length | 1596 bp |
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| Protein Length | 531 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 639327491 |
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| Product | transcriptional regulator RtcR |
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| Protein accession | YP_793040 |
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| Protein GI | 116052723 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG4650] Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 71 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGCA CGGTCGCCAT CGGCTTCATC GGCGCCACCC TCGACCGTCT CGGCAAGGGC
GCGGCGCGCT GGCAAAAGTG GCGGCCGAGC ATCGGCCTGT GCCAGCAGCC GGACCTGCTG
ATCGACCGCC TCGAACTGAT CCACGGCAAC GACGCCCGCG ACCTCGGCCT GGCCGAGCGG
ATTCGCGCCG ACATCGCCGC GGTGTCGCCG CATACCGAGG TCCGCCTGCA GCAGATGGAA
CTGCGCAACC CCTGGGACTT CGAGGAGGTC TATGGCGCCC TGCACGATTT CGTCAGCGCC
TACCCCTTCG ACACCGAGCG CGAGGACTAC CTGGTGCATA TCACCACCGG GACCCATGTC
GCGCAGATCT GCTGGTTCCT CCTTACCGAG GCGCGCTACC TGCCGGCCCG GCTGGTGCAG
ACCTCGCCGT CGCGGCGCAA GGACGAGGCG CGCCATCCCG AGGGCTCGGC GACGCTGATC
GACCTCGACC TGTCCCGCTA CGACCGCATC GCCTCGCGGT TCCGCCGCGA ACAGGAGGAA
AGCCTGGCTT TTCTCAAGTC GGGAATCGCC ACGCGCAATG CCGCTTTCAA CCGCTCCATC
GAGCAGATCG AGCGGGTCGC CGTGCGTTCG CGGGCACCCA TGCTGCTGGT GGGGCCGACC
GGTGCCGGCA AATCGTTCCT CGCCCGGCGC ATCTATGAAC TCAAGCGCAG CCGGCACCAG
CTCGACGGGC GTTTCGTCGA GGTCAACTGC GCCACCTTGC GCGGCGACGG CGCGATGTCG
GCACTGTTCG GCCACGTCAA GGGCGCCTTC ACCGGCGCGC AGAATGCGCG CGAAGGCCTG
CTGCGCGCAG CCGACGGTGG CATGCTGTTC CTCGACGAGA TCGGCGAGCT GGGTGCCGAC
GAACAGGCGA TGCTGCTCAA GGCGATCGAA GAGAAGCGCT TCTTCCCGCT GGGTTCGGAC
CGTGAGGTGG AGAGCGACTT CCAGCTTATC GCCGGGACCC ACCGCGACTT GCGCGGACGA
GTGGCCGAAG GCCTGTTCCG CGAGGACCTG TTCGCCCGCA TCAACCTGTG GACCTTCGAG
CTGCCGGGCC TGGCTGGACG CCGCGAGGAC ATCGAGCCGA ACATCGACTT CGAACTGGAG
CGGCACGCCC GCGAGCAAGG GCGGCAGGTG CGTTTCAACC TGGAGGCCAA GCGTCGCTAC
CTGGCCTTCG CCGGTTCCAG CGAAGCGCGC TGGGCCGGCA ACTTCCGCGA GCTGTCGGCT
TCCATCACAC GGATGGCGAC CCTGGCCGAC AGCGGGCGGA TCGACGAGGC GCTGGTCGAG
GAGGAGATCC TTCGCCTGCG CCAGGCCTGG GGGCTCGATG CGGGCCGGGA GCCACTGGCT
GATCTGCTGG GGCAGCGGGT GGAGGCCCTG GATCTGTTCG ACCGCCTGCA ACTGCAGTCG
GTGCTGGAGG TGTGCCGCGG GGCTAAGACC CTTTCCGAGG CGGGACGCCG GCTGTTCGCC
GTTTCGCGCC AGGACAAGCG CAACCCCAAC GACGCCGACC GGCTGCGCAA GTACCTGGCG
CGTTTCGGCC TGGACTGGGC GCAGATACGC GCCTGA
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| Protein sequence | MKRTVAIGFI GATLDRLGKG AARWQKWRPS IGLCQQPDLL IDRLELIHGN DARDLGLAER
IRADIAAVSP HTEVRLQQME LRNPWDFEEV YGALHDFVSA YPFDTEREDY LVHITTGTHV
AQICWFLLTE ARYLPARLVQ TSPSRRKDEA RHPEGSATLI DLDLSRYDRI ASRFRREQEE
SLAFLKSGIA TRNAAFNRSI EQIERVAVRS RAPMLLVGPT GAGKSFLARR IYELKRSRHQ
LDGRFVEVNC ATLRGDGAMS ALFGHVKGAF TGAQNAREGL LRAADGGMLF LDEIGELGAD
EQAMLLKAIE EKRFFPLGSD REVESDFQLI AGTHRDLRGR VAEGLFREDL FARINLWTFE
LPGLAGRRED IEPNIDFELE RHAREQGRQV RFNLEAKRRY LAFAGSSEAR WAGNFRELSA
SITRMATLAD SGRIDEALVE EEILRLRQAW GLDAGREPLA DLLGQRVEAL DLFDRLQLQS
VLEVCRGAKT LSEAGRRLFA VSRQDKRNPN DADRLRKYLA RFGLDWAQIR A
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