| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_60320 |
|---|
| Symbol | pilE |
|---|
| ID | 4385728 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | + |
|---|
| Start bp | 5376956 |
|---|
| End bp | 5377381 |
|---|
| Gene Length | 426 bp |
|---|
| Protein Length | 141 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639327466 |
|---|
| Product | type 4 fimbrial biogenesis protein PilE |
|---|
| Protein accession | YP_793015 |
|---|
| Protein GI | 116052699 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4968] Tfp pilus assembly protein PilE |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.000000362369 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTCGA ACAGAGGCTT CACTCTCATC GAGTTGATGA TCGTCGTAGT AATCATCGCT
ATTCTTGCTG GTATCGCCTA CCCCAGCTAC GACGAATACG TGAAGCGCGG GAATCGCACC
GAAGGACAGG CATTACTCAG CGAAGCAGCC GCTACTCAAG AGCGCTATTT TTCACAGAAC
AATACTTATA TCACTACCCA AGCCGACATC GGCAAGCTGC ATATGCGCAA CACATCGGGC
ACCACAGTGA AGTCCTCCAC AGGCAAATAC AGCCTTACCG TCGATACGGT AGCCAACGAC
GGAGGTTATC GCCTTATCGC TAACCAGGCA TTCAACGATC TTGATTGTGG CAACCTGACC
TTGACCGCCA ACGGCGAGAA AGGCCGGACT GGAAGCAAGA AGAGCGTTGC AGAATGCTGG
CGCTAA
|
|---|
| Protein sequence | MKSNRGFTLI ELMIVVVIIA ILAGIAYPSY DEYVKRGNRT EGQALLSEAA ATQERYFSQN
NTYITTQADI GKLHMRNTSG TTVKSSTGKY SLTVDTVAND GGYRLIANQA FNDLDCGNLT
LTANGEKGRT GSKKSVAECW R
|
|---|
| |