Gene PA14_60280 details

Gene Information

• Locus tag: PA14_60280
• Symbol: fimU
• ID: 4385724
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas aeruginosa UCBPP-PA14
• Kingdom: Bacteria
• Replicon accession: NC_008463
• Strand: +
• Start bp: 5370692
• End bp: 5371180
• Gene Length: 489 bp
• Protein Length: 162 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 639327462
• Product: type 4 fimbrial biogenesis protein FimU
• Protein accession: YP_793011
• Protein GI: 116052695
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG4970] Tfp pilus assembly protein FimT
• TIGRFAM ID: [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 46
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 18
• Fosmid unclonability p-value: 0.000000431898
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGCGCTCTA TTTGTCGCAG CGCCGGCTTT TCCCTGATCG AGTTGATGAT GGTGTTGGTT 
CTGGTCGCCA TATTCGCCAG CATTGCCGTA CCCAGTTTCA ACGCCTTGAT CGAGCGCAAC 
CGAATCCAGA CTGCCAGCGA GGAACTCTAC AGCCTGCTTC AGTACGCTCG CAGCGAAGCT 
GTAAACCGTC ATGCCAATGT GAGCATCAGG GCGACGCAGA ACAATGACTG GGCAAAAGGC 
CTGGAAATCA TCAGCGGCGC GACCACCGTG CAAAAGCACC AAGGTTTCCA GCAGGTCTCG 
CTATCCGCCA GCAGTGCGAC TGCGGAGCTG ACCTTCAACG CTACCGGCAC ACTTAGCAAC 
CAGGCTGCAA ACATTGACAT AAAGGTCTGC TTCGCCGGTG ACAAAAGTAC AGGACGTCTG 
CTTACCGTTC AGCCCAGTGG ACGCGTGATC CTGTACCCAT CTTCAAAGCA ACCGGACAGC 
TGTAACTGA 

 

Protein sequence

MRSICRSAGF SLIELMMVLV LVAIFASIAV PSFNALIERN RIQTASEELY SLLQYARSEA 
VNRHANVSIR ATQNNDWAKG LEIISGATTV QKHQGFQQVS LSASSATAEL TFNATGTLSN 
QAANIDIKVC FAGDKSTGRL LTVQPSGRVI LYPSSKQPDS CN