| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_59760 |
|---|
| Symbol | cupD5 |
|---|
| ID | 4385470 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | + |
|---|
| Start bp | 5318840 |
|---|
| End bp | 5319556 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639327412 |
|---|
| Product | putative pili assembly chaperone |
|---|
| Protein accession | YP_792964 |
|---|
| Protein GI | 116052649 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3121] P pilus assembly protein, chaperone PapD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000000000000219223 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 1.4963800000000001e-18 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGTCCAGTA AGATCCTGCT GCAAGGGGCA CTGCTCGGCC TAGCAATGCT GGCCGTGCTG
GACGCCCGAG CCGGAGTCAC CGCCGAGCGC ACTCGGGCAA TAATCGCCGA GGGGCACCGC
GAGACGTCGC TGCTGCTGGT CAACCAGAAT GCCTATCCGG TCATAGTGCA GACCTGGATC
GACGATGGCG CCCCGAACTC GACACCGCAG TCTGCCCGCG CGCCGATCAT GCCGCTACCG
CCGGTGTTCC GCCTCGAACC CGGACAGCAA CGCAGCCTGC GCCTGCTGCG GACCGGCCAG
GCGCTGCCAG GGGACCGCGA ATCGCTGTAC TGGTTGAACC TCTACGAAAT CCCGCCGCAA
GCCACCGGGC TGCTGGCCGA AGGACAGTCA CGGCTGACCG TTACACTGCG CACCCAGATG
AAAGTCATCT ACCGCCCTCG CCCTCTGGCC AGAGGGGCGG AAGAAGCGCC ACACCAGCTC
AGGTTCGAGC GGCGGGGCGA AACACTACAG ATGGAGAACC CTACTCCCTA TTTCATCAGC
CTCGCCGGCG CCGAGCTTGG CGGCCACACC CGCCTGGCGG CGGCCGAACT GTTGCCCCCC
TTCTCCAGGC GCGTCCTGGC GCTCCGCCAG GCGCTGCCCG GCGGCCAGGC CGAGGTGCGC
TTCAGCTGGA TCGATGACGG CGGCAATCTC CAGCAGGGAC GGAGCCTGCT TCACTGA
|
|---|
| Protein sequence | MSSKILLQGA LLGLAMLAVL DARAGVTAER TRAIIAEGHR ETSLLLVNQN AYPVIVQTWI
DDGAPNSTPQ SARAPIMPLP PVFRLEPGQQ RSLRLLRTGQ ALPGDRESLY WLNLYEIPPQ
ATGLLAEGQS RLTVTLRTQM KVIYRPRPLA RGAEEAPHQL RFERRGETLQ MENPTPYFIS
LAGAELGGHT RLAAAELLPP FSRRVLALRQ ALPGGQAEVR FSWIDDGGNL QQGRSLLH
|
|---|
| |