| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_59320 |
|---|
| Symbol | pilS2 |
|---|
| ID | 4382739 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | + |
|---|
| Start bp | 5284818 |
|---|
| End bp | 5285348 |
|---|
| Gene Length | 531 bp |
|---|
| Protein Length | 176 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639327374 |
|---|
| Product | type IV B pilus protein |
|---|
| Protein accession | YP_792926 |
|---|
| Protein GI | 116052611 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.00129697 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00000000000539359 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACTA CGCAACGCAC TTCCCGTCCG ACGCAGGGCG GTTTCGTTTC CATCGAGATG
ATCATCGTGC TGATCATCAT CGCCATCGGG GTCGGCCTGG GCCTGGCCGC AGCGGCTGGA
ATGTTCAGTT CGTCCAACGC CAACGAGGAA CAACGCAACA TCAGCGTCAT TGCGGCCAAC
GCACGCGCCC TGAAGACCTC TTCGGGCTAC GGCTCCAGCG GTACCAACCT GATCCCCAGC
CTGATCGCAA TCAACGGCGT GCCGAAGAAC ATGAGTGTCT CCTCCGGCGT CGTCTACAAC
GTCTACGGCG GATCGGTCAC TGTCTCGTCC ACCGGCATGG GCTTCTCGAT CACCACCAGC
AAGTTGCCCC AGGACGCCTG TATCACGCTG GCCACCAAGA TCGCGAAGAA CACCTTCGAG
CAGACCAAAA TCAACAGCGG ATCCTCGATC ACCGGAGAAG TGACCACCGC AGCCGCGACC
CAGGCCTGCA GCAGCGACAG CAACAGCATT ACCTGGACCT ATAGTTCGTG A
|
|---|
| Protein sequence | MSTTQRTSRP TQGGFVSIEM IIVLIIIAIG VGLGLAAAAG MFSSSNANEE QRNISVIAAN
ARALKTSSGY GSSGTNLIPS LIAINGVPKN MSVSSGVVYN VYGGSVTVSS TGMGFSITTS
KLPQDACITL ATKIAKNTFE QTKINSGSSI TGEVTTAAAT QACSSDSNSI TWTYSS
|
|---|
| |