Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PA14_55640 |
Symbol | sbcD |
ID | 4384614 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
Kingdom | Bacteria |
Replicon accession | NC_008463 |
Strand | + |
Start bp | 4957850 |
End bp | 4959079 |
Gene Length | 1230 bp |
Protein Length | 409 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 639327073 |
Product | exonuclease SbcD |
Protein accession | YP_792626 |
Protein GI | 116052315 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0420] DNA repair exonuclease |
TIGRFAM ID | [TIGR00619] exonuclease SbcD |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.000128845 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 0.404134 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCCTCA TACATACCTC CGACTGGCAC CTGGGTCAGA CCCTGCACGG CCAGGACCGC GATCATGAGC ACGCGCGCTT CCTCGACTGG CTGCTACGCC AGCTGGAAGA GCAGCGCGCC GATGTCCTGC TGATCGCGGG CGATATCTTC GACACGATCA ATCCACCGCT CAAAGCCCAG GAGCGCCTCT ACGACTTCAT CGTCAGCGCC CATCGGCGGC TGCCGCGGCT GGAGATCGTG ATGATCGCAG GCAACCACGA CTCCGGCGCG CGCATCGAAC TGCCCGCTCC GCTGATGAAA CGACTGAACG CCCATGCCAT CGGCCGGATC GGCTGGATAG ACGAAAGCCT CGATAGCGAT CGCCTGCTGC TGCCCCTGCA CGACGCGGAT GGCCAGGTCG CCGCCTGGTG CCTGGCCCTG CCCTTCCTGC GTCCCGCCGA AGTCACCGGA GGCGGGCTCG GCGACGATTA CCTGGCCGGT ATCCGCCAGG TGCACGAACG CCTGGTTGCC GCCGCGCAAG CCCGTCGCAC GCCGGGACAG GCACTGGTCG CCGTCAGCCA CGCACACATG GCCGGCGGCT CGGTTTCCGA AGACTCCGAG CGAAACCTGA TCATCGGCAA CGTCGAAGCG CTGCCCGCCA GCCTGTTTCC GGAGCAGATC GCCTACGTAG CCCTCGGTCA TCTGCACAAG CCACAGAAAG TCGCCGGACA GGAGCGCATT CGCTATAGCG GCTCGCCGCT GCCGCTGTCC TTCGCCGAAG TGAACTATCG CCACCAGGTC CTCCTCGTCA CCCTGGAAGG TGAGCGCCTG AAGGATGTAC AGAGTCTCCC GGTGCCACGC GCGGTGGAAC TGTTGCGCAT CGGCCCCGCG CCTCTTGGCG AGGTGCTCGA TCGAATCGGC GAACTGGCCG AGGCCGACCT GCTGAACGAA CAGCGGCCCT GGCTGGAGGT CCGCGTCATG CTGGATCAGC CGCAACCAGA CCTGCGCCAG CAGGTCGAGA GCGCCTTGCA GGGCAAGGCT TGCCGCCTGG TGCGCATCGC CAGCGAATAC CAGCGCCGCG ACGAAGAACA GGCGCCGCTG CTTGGGCTCG ACCAACTCAC CCCCCAGGAA CTGTTCAGCC GCGCCTGGGA AAGCGCCTAT GGCTCCGGCC CGGATGCGCA GGCGTTGGAT GACTTCGCCA GCCTGCTGCA AAGCGTCGAA CTGGCCACTG AAGAGCCCCC GGGGAAATAA
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Protein sequence | MRLIHTSDWH LGQTLHGQDR DHEHARFLDW LLRQLEEQRA DVLLIAGDIF DTINPPLKAQ ERLYDFIVSA HRRLPRLEIV MIAGNHDSGA RIELPAPLMK RLNAHAIGRI GWIDESLDSD RLLLPLHDAD GQVAAWCLAL PFLRPAEVTG GGLGDDYLAG IRQVHERLVA AAQARRTPGQ ALVAVSHAHM AGGSVSEDSE RNLIIGNVEA LPASLFPEQI AYVALGHLHK PQKVAGQERI RYSGSPLPLS FAEVNYRHQV LLVTLEGERL KDVQSLPVPR AVELLRIGPA PLGEVLDRIG ELAEADLLNE QRPWLEVRVM LDQPQPDLRQ QVESALQGKA CRLVRIASEY QRRDEEQAPL LGLDQLTPQE LFSRAWESAY GSGPDAQALD DFASLLQSVE LATEEPPGK
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