| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_55450 |
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| Symbol | |
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| ID | 4382532 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008463 |
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| Strand | - |
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| Start bp | 4934944 |
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| End bp | 4937355 |
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| Gene Length | 2412 bp |
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| Protein Length | 803 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 639327051 |
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| Product | putative type II secretion system protein |
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| Protein accession | YP_792609 |
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| Protein GI | 116048592 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000555876 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 0.092125 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGCAAT CAGCTTTCCA CCATGCCCGG CGTCGTTGGC CTGTACTGGG CGTGGCGCTG
GGCGCGCTAC TGGTCGCGGC GTGTAGCGAG ACGCCGAAGG TCCCCGGCGT GCCCCCGGCC
GACGAGGAAG TCGGTCGGCC GCTGAGCAGT GTCCGCTCCG GTGCGCCGTT GCGCAGCGCC
GACGTCCGCG AGCGGCCCCA GGCCGAGCAG GCCCGCCGCG CGCTGAGTGC CGGGCGCGGC
GTAGCGCGCT CCGGTGCCGT GGCTCCGGTC TCAGCGGCAG CGGCCGAACT CGGCGAGCAG
CCGGTCAGCC TGAATTTCGT CGATACCGAG GTGGAAGCGG TGGTGCGCGC GCTGTCGCGC
GCCACCGGCC GGCAGTTCCT GGTCGACCCG CGGGTGAAGG GCAAGCTGAC CCTGGTTTCC
GAAGGCCAGG TGCCGGCGCG CACCGCCTAC CGCATGCTCA CCAGCGCCCT GCGCATGCAG
GGCTTCAGCG TGGTCGACGT CGACGGGGTC AGCCAGGTGG TGCCGGAGGC CGACGCCAAG
CTGCTCGGCG GGCCGGTCTA CGGCGCCGAC CGGCCGGCGG CCAACGGCAT GGTCACGCGG
ACCTTCCGCC TGCGTTACGA GAACGCGGTG AACCTGATCC CGGTGCTGCG CCCGATCGTC
GCGCAGAACA ACCCGATCAA TGCCTATCCG GGGAACAACA CCGTGGTGGT CACCGACTAC
GCGGAAAACC TCGATCGGGT CGCCGGGATC ATCGCCAGCA TCGACATCCC CAGCGCCAGC
GACACCGACG TGGTGCCGAT CCAGAACGGT ATCGCGGTGG ACATCGCCAG CACCGTCTCC
GAACTGCTCG ACAGCCAGGG CAGCGGCGGC GCCGAGCAGG GCCAGAAGAC CGTGGTGCTC
GCCGACCCAC GCTCCAACAG CATCGTGATC CGCTCGCCGA GCCCGGAGCG CACGCAATTG
GCGCGCGACC TGATCGGCAA GCTGGACAGC GTGCAAAGCA ATCCCGGCAA CCTCCATGTG
GTCTACTTGC GCAACGCCCA GGCGACCCGC CTGGCCCAGG CCCTGCGCGG GCTGATCACC
GGCGACAGCG GCGGCGAGGG CAACGAGGGC GACCAGCAGC GCGCGCGCCT GAGCGGCGGC
GGCATGCTCG GTGGCGGCAA CAGCGGTACT GGTAGCCAGG CCCTGGGGAG CAGCGGCAAT
ACCACGGGCA GCGGTTCCAG CGGGTTGGGC GGCAGCAACC GCAGCGGCGG CGCCTATGGT
GCGATGGGCA GCGGCCAGGG CGGCGCCGGA CCCGGTGCGA TGGGCGAGGA GAACTCGGCG
TTCTCCGCCG GCGGGGTCAC CGTACAGGCC GACGCCACCA CCAACACCCT GCTGATTTCC
GCACCCGAGC CGTTGTACCG CAACCTCCGC GAAGTCATCG ACCTGCTCGA CCAGCGCCGC
GCCCAGGTGG TGATCGAAAG CCTGATCGTC GAGGTCAGCG AAGACGACTC CAGCGAGTTC
GGCATCCAGT GGCAGGCCGG CAACCTCGGC GGCAACGGCG TGTTCGGCGG GGTCAACTTC
GGCCAGTCGG CGCTGAACAC GGCCGGCAAG AACACCATCG ACGTGTTGCC CAAGGGGCTC
AACATCGGCC TGGTGGATGG CACCGTGGAC ATCCCCGGGA TCGGCAAGAT CCTCGACCTC
AAGGTGCTCG CCCGGGCGCT GAAGAGCCGC GGCGGCACCA ACGTCCTGTC GACCCCGAAC
CTGCTGACCC TGGACAACGA GTCGGCGAGC ATCATGGTCG GCCAGACCAT ACCCTTCGTC
AGCGGCCAGT ACGTCACCGA CGGCGGCGGT ACCAGCAACA ACCCGTTCCA GACCATCCAG
CGCGAGGACG TCGGCCTGAA GCTGAACATC CGTCCGCAGA TCTCCGAGGG CGGCACGGTC
AAGCTCGACG TCTACCAGGA GGTCAGCAGC GTCGACGAGC GCGCCAGCAC CGCCGCCGGG
GTGGTCACCA ACAAGCGCGC GATCGATACC AGCATCCTCC TCGACGACGG CCAGATCATG
GTCCTCGGCG GCCTGTTGCA GGACAACGTG CAGGACAACA CCGACGGCGT TCCCGGACTC
TCCAGCCTCC CCGGCGTCGG CTCGCTGTTC CGCTACCAGA AGCGCTCGCG GACCAAGACC
AACCTGATGG TCTTCCTGCG TCCCTACATC GTCCGCGACG CCGCCGCCGG GCGCAGCATC
ACCCTCAACC GCTACGACTT CATCCGCCGC GCCCAGCAGC GCGTGCAGCC GCGCCACGAC
TGGAGCGTCG GCGACATGCA GGCTCCGGTG CTGCCGCCGG CGCAGCAGGG CATCCCGCAG
GCCGCCTACG ACTTACGCCC GAGCCCGCGG CCGCTGCGCG CGGTACCGCT GGGCGAGGCG
GCGCCGCTAT GA
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| Protein sequence | MRQSAFHHAR RRWPVLGVAL GALLVAACSE TPKVPGVPPA DEEVGRPLSS VRSGAPLRSA
DVRERPQAEQ ARRALSAGRG VARSGAVAPV SAAAAELGEQ PVSLNFVDTE VEAVVRALSR
ATGRQFLVDP RVKGKLTLVS EGQVPARTAY RMLTSALRMQ GFSVVDVDGV SQVVPEADAK
LLGGPVYGAD RPAANGMVTR TFRLRYENAV NLIPVLRPIV AQNNPINAYP GNNTVVVTDY
AENLDRVAGI IASIDIPSAS DTDVVPIQNG IAVDIASTVS ELLDSQGSGG AEQGQKTVVL
ADPRSNSIVI RSPSPERTQL ARDLIGKLDS VQSNPGNLHV VYLRNAQATR LAQALRGLIT
GDSGGEGNEG DQQRARLSGG GMLGGGNSGT GSQALGSSGN TTGSGSSGLG GSNRSGGAYG
AMGSGQGGAG PGAMGEENSA FSAGGVTVQA DATTNTLLIS APEPLYRNLR EVIDLLDQRR
AQVVIESLIV EVSEDDSSEF GIQWQAGNLG GNGVFGGVNF GQSALNTAGK NTIDVLPKGL
NIGLVDGTVD IPGIGKILDL KVLARALKSR GGTNVLSTPN LLTLDNESAS IMVGQTIPFV
SGQYVTDGGG TSNNPFQTIQ REDVGLKLNI RPQISEGGTV KLDVYQEVSS VDERASTAAG
VVTNKRAIDT SILLDDGQIM VLGGLLQDNV QDNTDGVPGL SSLPGVGSLF RYQKRSRTKT
NLMVFLRPYI VRDAAAGRSI TLNRYDFIRR AQQRVQPRHD WSVGDMQAPV LPPAQQGIPQ
AAYDLRPSPR PLRAVPLGEA APL
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