| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_54430 |
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| Symbol | algU |
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| ID | 4385213 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008463 |
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| Strand | - |
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| Start bp | 4826072 |
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| End bp | 4826653 |
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| Gene Length | 582 bp |
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| Protein Length | 193 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 639326963 |
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| Product | RNA polymerase sigma factor AlgU |
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| Protein accession | YP_792522 |
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| Protein GI | 116048678 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00000031272 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTAACCC AGGAACAGGA TCAGCAACTG GTTGAACGGG TACAGCGCGG AGACAAGCGG
GCTTTCGATC TGCTGGTACT GAAATACCAG CACAAGATAC TGGGATTGAT CGTGCGGTTC
GTGCACGACG CCCAGGAAGC CCAGGACGTA GCGCAGGAAG CCTTCATCAA GGCATACCGC
GCGCTCGGCA ATTTCCGCGG CGATAGTGCT TTTTATACCT GGCTGTATCG GATCGCCATC
AACACCGCGA AGAACCATCT GGTCGCTCGC GGGCGTCGGC CACCGGACAG CGATGTGACC
GCAGAGGATG CGGAGTTCTT CGAGGGCGAC CACGCCCTGA AGGACATCGA ATCGCCGGAA
CGGGCGATGT TGCGGGATGA GATCGAGGCC ACCGTGCACC AGACCATCCA GCAGTTGCCC
GAGGATTTGC GCACGGCCCT GACCCTGCGC GAGTTCGAAG GTTTGAGTTA CGAAGATATC
GCCACCGTGA TGCAGTGTCC GGTGGGGACG GTGCGGTCGC GGATCTTCCG CGCTCGTGAA
GCAATCGACA AAGCTCTGCA GCCTTTGTTG CGAGAAGCCT GA
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| Protein sequence | MLTQEQDQQL VERVQRGDKR AFDLLVLKYQ HKILGLIVRF VHDAQEAQDV AQEAFIKAYR
ALGNFRGDSA FYTWLYRIAI NTAKNHLVAR GRRPPDSDVT AEDAEFFEGD HALKDIESPE
RAMLRDEIEA TVHQTIQQLP EDLRTALTLR EFEGLSYEDI ATVMQCPVGT VRSRIFRARE
AIDKALQPLL REA
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